Result of FASTA (omim) for
pFN21AE3615
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3615, 340 aa
1>>>pF1KE3615 340 - 340 aa - 340 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0939+/-0.000523; mu= 12.5867+/- 0.032
mean_var=156.9591+/-32.280, 0's: 0 Z-trim(111.0): 447 B-trim: 298 in 2/52
Lambda= 0.102372
statistics sampled from 18817 (19433) to 18817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.228), width: 16
Scan time: 6.510
The best scores are: opt bits E(85289)
NP_002066 (OMIM: 139130,145500,617024) guanine nuc ( 340) 2314 354.4 2e-97
NP_001284500 (OMIM: 139130,145500,617024) guanine ( 339) 2289 350.7 2.6e-96
XP_011519255 (OMIM: 139130,145500,617024) PREDICTE ( 360) 2078 319.6 6.4e-87
XP_016856549 (OMIM: 139380,613065,616973) PREDICTE ( 340) 2019 310.9 2.6e-84
XP_016856548 (OMIM: 139380,613065,616973) PREDICTE ( 340) 2019 310.9 2.6e-84
NP_002065 (OMIM: 139380,613065,616973) guanine nuc ( 340) 2019 310.9 2.6e-84
NP_001269468 (OMIM: 139380,613065,616973) guanine ( 340) 2019 310.9 2.6e-84
XP_016856550 (OMIM: 139380,613065,616973) PREDICTE ( 340) 2019 310.9 2.6e-84
NP_005264 (OMIM: 139390) guanine nucleotide-bindin ( 340) 1962 302.5 8.9e-82
XP_005247749 (OMIM: 610863,615185) PREDICTED: guan ( 340) 1952 301.0 2.5e-81
NP_067642 (OMIM: 610863,615185) guanine nucleotide ( 340) 1952 301.0 2.5e-81
XP_006713784 (OMIM: 610863,615185) PREDICTED: guan ( 340) 1952 301.0 2.5e-81
NP_001269467 (OMIM: 139380,613065,616973) guanine ( 240) 1461 228.3 1.3e-59
NP_006569 (OMIM: 604447) guanine nucleotide-bindin ( 353) 1234 195.0 2.1e-49
NP_057278 (OMIM: 604447) guanine nucleotide-bindin ( 395) 1234 195.0 2.3e-49
XP_011519464 (OMIM: 604447) PREDICTED: guanine nuc ( 353) 1179 186.8 5.9e-47
XP_011519465 (OMIM: 604447) PREDICTED: guanine nuc ( 301) 1166 184.8 2e-46
XP_016877356 (OMIM: 604447) PREDICTED: guanine nuc ( 212) 798 130.3 3.7e-30
NP_006089 (OMIM: 176981) receptor of activated pro ( 317) 407 72.8 1.2e-12
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334) 395 71.0 4.1e-12
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334) 395 71.0 4.1e-12
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334) 395 71.0 4.1e-12
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 393 71.0 6.6e-12
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 393 71.0 6.6e-12
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 357 65.3 1.8e-10
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 357 65.3 1.8e-10
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 353 65.1 4.1e-10
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 353 65.1 4.4e-10
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 353 65.2 4.7e-10
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 353 65.2 4.7e-10
NP_008882 (OMIM: 601787) transcription initiation ( 800) 353 65.3 5.2e-10
NP_001290177 (OMIM: 609540) WD repeat-containing p ( 212) 313 58.7 1.4e-08
NP_001290176 (OMIM: 609540) WD repeat-containing p ( 305) 313 58.8 1.7e-08
XP_011520396 (OMIM: 609540) PREDICTED: WD repeat-c ( 305) 313 58.8 1.7e-08
NP_079510 (OMIM: 609540) WD repeat-containing prot ( 305) 313 58.8 1.7e-08
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 311 59.0 3.4e-08
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 311 59.0 3.4e-08
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 311 59.0 3.4e-08
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 311 59.0 3.4e-08
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 311 59.0 3.4e-08
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 311 59.0 3.4e-08
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 311 59.0 3.4e-08
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 311 59.0 3.4e-08
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 311 59.0 3.4e-08
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 311 59.0 3.4e-08
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 311 59.0 3.4e-08
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357) 307 58.0 3.5e-08
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 308 58.3 3.6e-08
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 305 57.8 4.3e-08
NP_387449 (OMIM: 605651) F-box/WD repeat-containin ( 508) 307 58.2 4.3e-08
>>NP_002066 (OMIM: 139130,145500,617024) guanine nucleot (340 aa)
initn: 2314 init1: 2314 opt: 2314 Z-score: 1870.1 bits: 354.4 E(85289): 2e-97
Smith-Waterman score: 2314; 99.7% identity (100.0% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
NP_002 ICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSM
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
::::::::::::::::::::::::::::::::::::::::
NP_002 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
310 320 330 340
>>NP_001284500 (OMIM: 139130,145500,617024) guanine nucl (339 aa)
initn: 1237 init1: 1237 opt: 2289 Z-score: 1850.2 bits: 350.7 E(85289): 2.6e-96
Smith-Waterman score: 2289; 99.4% identity (99.7% similar) in 340 aa overlap (1-340:1-339)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTT-ALWDIETGQQKTVF
130 140 150 160 170
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
NP_001 ICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSM
240 250 260 270 280 290
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
::::::::::::::::::::::::::::::::::::::::
NP_001 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
300 310 320 330
>>XP_011519255 (OMIM: 139130,145500,617024) PREDICTED: g (360 aa)
initn: 2078 init1: 2078 opt: 2078 Z-score: 1681.5 bits: 319.6 E(85289): 6.4e-87
Smith-Waterman score: 2078; 99.7% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
XP_011 ICTGSDDASCRLFDLRADQELICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVWDSM
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
::::::
XP_011 KSERVGKGQPWLLLPQLEGPSPALPPHSVPPISSHFGLSYCCPLSLGDSTPGIQYPLVPN
310 320 330 340 350 360
>>XP_016856549 (OMIM: 139380,613065,616973) PREDICTED: g (340 aa)
initn: 2019 init1: 2019 opt: 2019 Z-score: 1634.7 bits: 310.9 E(85289): 2.6e-84
Smith-Waterman score: 2019; 82.9% identity (96.8% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
:.:..::::::::::.:: ::::::::.::........ :::.:::::::::::::::::
XP_016 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
:::.:::.::::::::::::.:::::::::::::::::::::::::::::.::::::::.
XP_016 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
:::::::.:::::.:::::..::::::::::::::.:::::::::::::::::::: :.:
XP_016 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
.::::: :::...:: ::.:::::::::::::::: :::::::::::::::::::::.:
XP_016 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
. ::::::.::::::::::::. .::..:::.::::.:: :::::.::::::::::::..
XP_016 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
:..:.:.:.:::::::::::: ::::::::::::::::::
XP_016 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
310 320 330 340
>>XP_016856548 (OMIM: 139380,613065,616973) PREDICTED: g (340 aa)
initn: 2019 init1: 2019 opt: 2019 Z-score: 1634.7 bits: 310.9 E(85289): 2.6e-84
Smith-Waterman score: 2019; 82.9% identity (96.8% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
:.:..::::::::::.:: ::::::::.::........ :::.:::::::::::::::::
XP_016 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
:::.:::.::::::::::::.:::::::::::::::::::::::::::::.::::::::.
XP_016 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
:::::::.:::::.:::::..::::::::::::::.:::::::::::::::::::: :.:
XP_016 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
.::::: :::...:: ::.:::::::::::::::: :::::::::::::::::::::.:
XP_016 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
. ::::::.::::::::::::. .::..:::.::::.:: :::::.::::::::::::..
XP_016 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
:..:.:.:.:::::::::::: ::::::::::::::::::
XP_016 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
310 320 330 340
>>NP_002065 (OMIM: 139380,613065,616973) guanine nucleot (340 aa)
initn: 2019 init1: 2019 opt: 2019 Z-score: 1634.7 bits: 310.9 E(85289): 2.6e-84
Smith-Waterman score: 2019; 82.9% identity (96.8% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
:.:..::::::::::.:: ::::::::.::........ :::.:::::::::::::::::
NP_002 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
:::.:::.::::::::::::.:::::::::::::::::::::::::::::.::::::::.
NP_002 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
:::::::.:::::.:::::..::::::::::::::.:::::::::::::::::::: :.:
NP_002 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
.::::: :::...:: ::.:::::::::::::::: :::::::::::::::::::::.:
NP_002 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
. ::::::.::::::::::::. .::..:::.::::.:: :::::.::::::::::::..
NP_002 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
:..:.:.:.:::::::::::: ::::::::::::::::::
NP_002 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
310 320 330 340
>>NP_001269468 (OMIM: 139380,613065,616973) guanine nucl (340 aa)
initn: 2019 init1: 2019 opt: 2019 Z-score: 1634.7 bits: 310.9 E(85289): 2.6e-84
Smith-Waterman score: 2019; 82.9% identity (96.8% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
:.:..::::::::::.:: ::::::::.::........ :::.:::::::::::::::::
NP_001 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
:::.:::.::::::::::::.:::::::::::::::::::::::::::::.::::::::.
NP_001 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
:::::::.:::::.:::::..::::::::::::::.:::::::::::::::::::: :.:
NP_001 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
.::::: :::...:: ::.:::::::::::::::: :::::::::::::::::::::.:
NP_001 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
. ::::::.::::::::::::. .::..:::.::::.:: :::::.::::::::::::..
NP_001 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
:..:.:.:.:::::::::::: ::::::::::::::::::
NP_001 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
310 320 330 340
>>XP_016856550 (OMIM: 139380,613065,616973) PREDICTED: g (340 aa)
initn: 2019 init1: 2019 opt: 2019 Z-score: 1634.7 bits: 310.9 E(85289): 2.6e-84
Smith-Waterman score: 2019; 82.9% identity (96.8% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
:.:..::::::::::.:: ::::::::.::........ :::.:::::::::::::::::
XP_016 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
:::.:::.::::::::::::.:::::::::::::::::::::::::::::.::::::::.
XP_016 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
:::::::.:::::.:::::..::::::::::::::.:::::::::::::::::::: :.:
XP_016 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
.::::: :::...:: ::.:::::::::::::::: :::::::::::::::::::::.:
XP_016 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
. ::::::.::::::::::::. .::..:::.::::.:: :::::.::::::::::::..
XP_016 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
:..:.:.:.:::::::::::: ::::::::::::::::::
XP_016 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
310 320 330 340
>>NP_005264 (OMIM: 139390) guanine nucleotide-binding pr (340 aa)
initn: 1962 init1: 1962 opt: 1962 Z-score: 1589.2 bits: 302.5 E(85289): 8.9e-82
Smith-Waterman score: 1962; 80.6% identity (94.4% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
:.:.::::::::::..:: ::::::.: ::.....::. :::.:::::::::::::::::
NP_005 MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
:::.:::.::::::::::::.::::::::::::::::::::::::::::::::::::::.
NP_005 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
::::.::.:::::.::::: .::::::::::::::.:.:::::::::::::::::: . :
NP_005 CSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
.::.:: :::...:: :.::::::: ::::::.. ::::: ::::::::. ::::: :
NP_005 AGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
. ::::::.::::::::::::. .::..:::.::::::: :::::.:::::::::.::.:
NP_005 FTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAM
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
:..:.:.:.:::::::::::: ::::::::::::::::::
NP_005 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
310 320 330 340
>>XP_005247749 (OMIM: 610863,615185) PREDICTED: guanine (340 aa)
initn: 1952 init1: 1952 opt: 1952 Z-score: 1581.2 bits: 301.0 E(85289): 2.5e-81
Smith-Waterman score: 1952; 79.4% identity (95.0% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KE3 MGEMEQLRQEAEQLKKQIADARKACADVTLAELVSGLEVVGRVQMRTRRTLRGHLAKIYA
:.:.::::::::::..:: :::::: :.::....:... :::.:::::::::::::::::
XP_005 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 MHWATDSKLLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNM
:::. ::.::::::::::::.::::::::.::::::::::::::::::::.::::::::.
XP_005 MHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CSIYNLKSREGNVKVSRELSAHTGYLSCCRFLDDNNIVTSSGDTTCALWDIETGQQKTVF
:::::::.:::::.::::: .:::::::::::::..:::::::::::::::::.:: :.:
XP_005 CSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 VGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEA
.::.:: :::..:::. :.:::::::.::::.:.: :::.:::: :::::. ::::: :
XP_005 TGHSGDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ICTGSDDASCRLFDLRADQELICFSHESIICSITSVAFSLSGRLLFAGYDDFNCNVWDSM
. ::::::.::::::::::::. .::..:::.::::::: :::::.::::::::::::..
XP_005 FATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTL
250 260 270 280 290 300
310 320 330 340
pF1KE3 KSERVGILSGHDNRVSCLGVTADGMAVATGSWDSFLKIWN
:..:.:.:.:::::::::::: ::::::::::::::.:::
XP_005 KGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN
310 320 330 340
340 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:44:39 2016 done: Mon Nov 7 02:44:40 2016
Total Scan time: 6.510 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]