Result of FASTA (omim) for
pFN21AE3613
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3613, 148 aa
1>>>pF1KE3613 148 - 148 aa - 148 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5932+/-0.000298; mu= 14.8296+/- 0.018
mean_var=52.8454+/-10.761, 0's: 0 Z-trim(116.7): 17 B-trim: 0 in 0/54
Lambda= 0.176429
statistics sampled from 27976 (27992) to 27976 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.328), width: 16
Scan time: 5.090
The best scores are: opt bits E(85289)
NP_005846 (OMIM: 605153) receptor activity-modifyi ( 148) 1044 273.0 1.3e-73
NP_001295282 (OMIM: 605153) receptor activity-modi ( 126) 885 232.5 1.7e-61
XP_016858645 (OMIM: 605153) PREDICTED: receptor ac ( 126) 885 232.5 1.7e-61
XP_016858641 (OMIM: 605153) PREDICTED: receptor ac ( 126) 885 232.5 1.7e-61
XP_016858642 (OMIM: 605153) PREDICTED: receptor ac ( 126) 885 232.5 1.7e-61
XP_016858643 (OMIM: 605153) PREDICTED: receptor ac ( 126) 885 232.5 1.7e-61
XP_016858644 (OMIM: 605153) PREDICTED: receptor ac ( 104) 462 124.7 3.7e-29
NP_005847 (OMIM: 605155) receptor activity-modifyi ( 148) 297 82.8 2.2e-16
XP_006715694 (OMIM: 605155) PREDICTED: receptor ac ( 259) 294 82.2 5.8e-16
XP_016867155 (OMIM: 605155) PREDICTED: receptor ac ( 116) 286 80.0 1.2e-15
NP_005845 (OMIM: 605154) receptor activity-modifyi ( 175) 248 70.4 1.4e-12
>>NP_005846 (OMIM: 605153) receptor activity-modifying p (148 aa)
initn: 1044 init1: 1044 opt: 1044 Z-score: 1442.9 bits: 273.0 E(85289): 1.3e-73
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
70 80 90 100 110 120
130 140
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
::::::::::::::::::::::::::::
NP_005 PFIVVPITVTLLVTALVVWQSKRTEGIV
130 140
>>NP_001295282 (OMIM: 605153) receptor activity-modifyin (126 aa)
initn: 885 init1: 885 opt: 885 Z-score: 1225.1 bits: 232.5 E(85289): 1.7e-61
Smith-Waterman score: 885; 100.0% identity (100.0% similar) in 126 aa overlap (23-148:1-126)
10 20 30 40 50 60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
::::::::::::::::::::::::::::::::::::::
NP_001 MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
10 20 30
70 80 90 100 110 120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
40 50 60 70 80 90
130 140
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
::::::::::::::::::::::::::::
NP_001 PFIVVPITVTLLVTALVVWQSKRTEGIV
100 110 120
>>XP_016858645 (OMIM: 605153) PREDICTED: receptor activi (126 aa)
initn: 885 init1: 885 opt: 885 Z-score: 1225.1 bits: 232.5 E(85289): 1.7e-61
Smith-Waterman score: 885; 100.0% identity (100.0% similar) in 126 aa overlap (23-148:1-126)
10 20 30 40 50 60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
::::::::::::::::::::::::::::::::::::::
XP_016 MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
10 20 30
70 80 90 100 110 120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
40 50 60 70 80 90
130 140
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
::::::::::::::::::::::::::::
XP_016 PFIVVPITVTLLVTALVVWQSKRTEGIV
100 110 120
>>XP_016858641 (OMIM: 605153) PREDICTED: receptor activi (126 aa)
initn: 885 init1: 885 opt: 885 Z-score: 1225.1 bits: 232.5 E(85289): 1.7e-61
Smith-Waterman score: 885; 100.0% identity (100.0% similar) in 126 aa overlap (23-148:1-126)
10 20 30 40 50 60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
::::::::::::::::::::::::::::::::::::::
XP_016 MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
10 20 30
70 80 90 100 110 120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
40 50 60 70 80 90
130 140
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
::::::::::::::::::::::::::::
XP_016 PFIVVPITVTLLVTALVVWQSKRTEGIV
100 110 120
>>XP_016858642 (OMIM: 605153) PREDICTED: receptor activi (126 aa)
initn: 885 init1: 885 opt: 885 Z-score: 1225.1 bits: 232.5 E(85289): 1.7e-61
Smith-Waterman score: 885; 100.0% identity (100.0% similar) in 126 aa overlap (23-148:1-126)
10 20 30 40 50 60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
::::::::::::::::::::::::::::::::::::::
XP_016 MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
10 20 30
70 80 90 100 110 120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
40 50 60 70 80 90
130 140
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
::::::::::::::::::::::::::::
XP_016 PFIVVPITVTLLVTALVVWQSKRTEGIV
100 110 120
>>XP_016858643 (OMIM: 605153) PREDICTED: receptor activi (126 aa)
initn: 885 init1: 885 opt: 885 Z-score: 1225.1 bits: 232.5 E(85289): 1.7e-61
Smith-Waterman score: 885; 100.0% identity (100.0% similar) in 126 aa overlap (23-148:1-126)
10 20 30 40 50 60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
::::::::::::::::::::::::::::::::::::::
XP_016 MTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
10 20 30
70 80 90 100 110 120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
40 50 60 70 80 90
130 140
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
::::::::::::::::::::::::::::
XP_016 PFIVVPITVTLLVTALVVWQSKRTEGIV
100 110 120
>>XP_016858644 (OMIM: 605153) PREDICTED: receptor activi (104 aa)
initn: 473 init1: 456 opt: 462 Z-score: 644.5 bits: 124.7 E(85289): 3.7e-29
Smith-Waterman score: 462; 75.5% identity (81.9% similar) in 94 aa overlap (1-94:1-89)
10 20 30 40 50 60
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILY
:::: : : : .. .: :.. .::
XP_016 RTIRP-RLL--CLQSGDQNSAC--PQSTFKSLFLPPWEALGCPGAAVGE
70 80 90 100
130 140
pF1KE3 PFIVVPITVTLLVTALVVWQSKRTEGIV
>>NP_005847 (OMIM: 605155) receptor activity-modifying p (148 aa)
initn: 300 init1: 286 opt: 297 Z-score: 415.3 bits: 82.8 E(85289): 2.2e-16
Smith-Waterman score: 297; 34.3% identity (63.5% similar) in 137 aa overlap (13-148:14-148)
10 20 30 40 50
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLR-ELCLTQFQVDMEAVGETLWCD
: ::: . .:.:. : : : :: : : : ::.
NP_005 METGALRRPQLLPLLLLLCGGCPRAGGCNET--GMLERLPLCGKAFADMMGKVDVWKWCN
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 WGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSI
.. : :. ...:: :. .::.::: .. :. ..: ..: .: .. ..::: .
NP_005 LSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEV
60 70 80 90 100 110
120 130 140
pF1KE3 LYPFIVVPITVTLLVTALVVWQSKRTEGIV
: :.::.:...:. ...::::.::::. ..
NP_005 LIPLIVIPVVLTVAMAGLVVWRSKRTDTLL
120 130 140
>>XP_006715694 (OMIM: 605155) PREDICTED: receptor activi (259 aa)
initn: 286 init1: 286 opt: 294 Z-score: 407.6 bits: 82.2 E(85289): 5.8e-16
Smith-Waterman score: 294; 35.0% identity (65.9% similar) in 123 aa overlap (27-148:139-259)
10 20 30 40 50
pF1KE3 MARALCRLPRRGLWLLLAHHLFMTTACQEANYGALLR-ELCLTQFQVDMEAVGETL
:.:. : : : :: : : :
XP_006 VGHLEGGTVKLQKDTGLHSCRDGGCPRAGGCNET--GMLERLPLCGKAFADMMGKVDVWK
110 120 130 140 150 160
60 70 80 90 100 110
pF1KE3 WCDWGRTIRSYRELADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPP
::. .. : :. ...:: :. .::.::: .. :. ..: ..: .: .. ..:::
XP_006 WCNLSEFIVYYESFTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPP
170 180 190 200 210 220
120 130 140
pF1KE3 GSILYPFIVVPITVTLLVTALVVWQSKRTEGIV
.: :.::.:...:. ...::::.::::. ..
XP_006 DEVLIPLIVIPVVLTVAMAGLVVWRSKRTDTLL
230 240 250
>>XP_016867155 (OMIM: 605155) PREDICTED: receptor activi (116 aa)
initn: 297 init1: 286 opt: 286 Z-score: 401.7 bits: 80.0 E(85289): 1.2e-15
Smith-Waterman score: 286; 34.5% identity (67.3% similar) in 110 aa overlap (39-148:7-116)
10 20 30 40 50 60
pF1KE3 PRRGLWLLLAHHLFMTTACQEANYGALLRELCLTQFQVDMEAVGETLWCDWGRTIRSYRE
:: : : : ::. .. : :.
XP_016 MLERLPLCGKAFADMMGKVDVWKWCNLSEFIVYYES
10 20 30
70 80 90 100 110 120
pF1KE3 LADCTWHMAEKLGCFWPNAEVDRFFLAVHGRYFRSCPISGRAVRDPPGSILYPFIVVPIT
...:: :. .::.::: .. :. ..: ..: .: .. ..::: .: :.::.:..
XP_016 FTNCTEMEANVVGCYWPNPLAQGFITGIHRQFFSNCTVDRVHLEDPPDEVLIPLIVIPVV
40 50 60 70 80 90
130 140
pF1KE3 VTLLVTALVVWQSKRTEGIV
.:. ...::::.::::. ..
XP_016 LTVAMAGLVVWRSKRTDTLL
100 110
148 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:03:10 2016 done: Mon Nov 7 03:03:11 2016
Total Scan time: 5.090 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]