Result of FASTA (omim) for
pFN21AE3611
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3611, 95 aa
1>>>pF1KE3611 95 - 95 aa - 95 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9067+/-0.000247; mu= 11.7171+/- 0.015
mean_var=62.7837+/-12.737, 0's: 0 Z-trim(121.9): 6 B-trim: 0 in 0/52
Lambda= 0.161864
statistics sampled from 39286 (39292) to 39286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.461), width: 16
Scan time: 4.690
The best scores are: opt bits E(85289)
NP_002713 (OMIM: 167780) pancreatic prohormone iso ( 95) 637 155.9 9.1e-39
NP_001306138 (OMIM: 167780) pancreatic prohormone ( 101) 637 155.9 9.6e-39
XP_011523280 (OMIM: 167780) PREDICTED: pancreatic ( 104) 637 155.9 9.8e-39
NP_004151 (OMIM: 600781) peptide YY preproprotein ( 97) 183 49.9 7.6e-07
NP_000896 (OMIM: 162640) pro-neuropeptide Y prepro ( 97) 175 48.0 2.8e-06
XP_011523337 (OMIM: 600781) PREDICTED: peptide YY ( 97) 172 47.3 4.5e-06
>>NP_002713 (OMIM: 167780) pancreatic prohormone isoform (95 aa)
initn: 637 init1: 637 opt: 637 Z-score: 817.0 bits: 155.9 E(85289): 9.1e-39
Smith-Waterman score: 637; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)
10 20 30 40 50 60
pF1KE3 MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLRRYINML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLRRYINML
10 20 30 40 50 60
70 80 90
pF1KE3 TRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
:::::::::::::::::::::::::::::::::::
NP_002 TRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
70 80 90
>>NP_001306138 (OMIM: 167780) pancreatic prohormone isof (101 aa)
initn: 637 init1: 637 opt: 637 Z-score: 816.6 bits: 155.9 E(85289): 9.6e-39
Smith-Waterman score: 637; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:7-101)
10 20 30 40 50
pF1KE3 MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCDCDLMAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLR
10 20 30 40 50 60
60 70 80 90
pF1KE3 RYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
:::::::::::::::::::::::::::::::::::::::::
NP_001 RYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
70 80 90 100
>>XP_011523280 (OMIM: 167780) PREDICTED: pancreatic proh (104 aa)
initn: 637 init1: 637 opt: 637 Z-score: 816.4 bits: 155.9 E(85289): 9.8e-39
Smith-Waterman score: 637; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:10-104)
10 20 30 40 50
pF1KE3 MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAA
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTFVFALWNMAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAA
10 20 30 40 50 60
60 70 80 90
pF1KE3 DLRRYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLRRYINMLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
70 80 90 100
>>NP_004151 (OMIM: 600781) peptide YY preproprotein [Hom (97 aa)
initn: 181 init1: 173 opt: 183 Z-score: 243.9 bits: 49.9 E(85289): 7.6e-07
Smith-Waterman score: 183; 48.4% identity (72.6% similar) in 62 aa overlap (15-74:12-73)
10 20 30 40 50
pF1KE3 MAAARLCLSLLLLSTCVALLLQPLLGA--QGAPLEPVYPGDNATPEQMAQYAADLRRYIN
: : : : ::: .. :..: ::..:.::.. .: :.::.:.:
NP_004 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPGEDASPEELNRYYASLRHYLN
10 20 30 40 50
60 70 80 90
pF1KE3 MLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
..:: ::::: :::
NP_004 LVTRQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
60 70 80 90
>>NP_000896 (OMIM: 162640) pro-neuropeptide Y preproprot (97 aa)
initn: 182 init1: 160 opt: 175 Z-score: 233.8 bits: 48.0 E(85289): 2.8e-06
Smith-Waterman score: 175; 43.2% identity (67.6% similar) in 74 aa overlap (1-74:2-73)
10 20 30 40 50
pF1KE3 MAAARLCLSLLLLSTCVALLLQPLLGAQGAPLEPVYPGDNATPEQMAQYAADLRRYINM
.. :: :: : :. . . : : :.. : .: ::..: :.::.: . ::.:::.
NP_000 MLGNKRLGLSGLTLALSLLVCLGAL--AEAYPSKPDNPGEDAPAEDMARYYSALRHYINL
10 20 30 40 50
60 70 80 90
pF1KE3 LTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
.:: ::::: . .::
NP_000 ITRQRYGKRSSPETLISDLLMRESTENVPRTRLEDPAMW
60 70 80 90
>>XP_011523337 (OMIM: 600781) PREDICTED: peptide YY isof (97 aa)
initn: 170 init1: 162 opt: 172 Z-score: 230.0 bits: 47.3 E(85289): 4.5e-06
Smith-Waterman score: 172; 46.8% identity (71.0% similar) in 62 aa overlap (15-74:12-73)
10 20 30 40 50
pF1KE3 MAAARLCLSLLLLSTCVALLLQPLLGA--QGAPLEPVYPGDNATPEQMAQYAADLRRYIN
: : : : ::: .. :..: : ..:.::.. .: :.::.:.:
XP_011 MVFVRRPWPALTTVLLALLVCLGALVDAYPIKPEAPREDASPEELNRYYASLRHYLN
10 20 30 40 50
60 70 80 90
pF1KE3 MLTRPRYGKRHKEDTLAFSEWGSPHAAVPRELSPLDL
..:: ::::: :::
XP_011 LVTRQRYGKRDGPDTLLSKTFFPDGEDRPVRSRSEGPDLW
60 70 80 90
95 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:49:00 2016 done: Sun Nov 6 09:49:01 2016
Total Scan time: 4.690 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]