Result of FASTA (ccds) for
pFN21AE3601
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3601, 179 aa
1>>>pF1KE3601 179 - 179 aa - 179 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9696+/-0.000681; mu= 15.2125+/- 0.041
mean_var=61.8824+/-12.365, 0's: 0 Z-trim(110.1): 66 B-trim: 212 in 1/50
Lambda= 0.163039
statistics sampled from 11286 (11354) to 11286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.349), width: 16
Scan time: 2.010
The best scores are: opt bits E(32554)
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 1197 289.2 8.9e-79
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 947 230.4 3.7e-61
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 724 177.9 2.4e-45
CCDS13371.1 UBE2C gene_id:11065|Hs108|chr20 ( 161) 483 121.3 3e-28
CCDS74733.1 UBE2C gene_id:11065|Hs108|chr20 ( 79) 473 118.7 8.5e-28
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 411 104.3 3.5e-23
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 408 103.6 5.8e-23
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 366 93.7 5.4e-20
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 362 92.8 1e-19
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 356 91.3 2.3e-19
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 356 91.4 2.7e-19
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 347 89.2 1.2e-18
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 345 88.8 1.6e-18
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 345 88.8 1.6e-18
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 340 87.7 4.8e-18
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 337 86.9 6e-18
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 338 87.2 6.5e-18
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 330 85.3 2e-17
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 325 84.1 5.3e-17
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 323 83.7 7.4e-17
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 309 80.4 7.4e-16
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 304 79.1 1.1e-15
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 303 78.8 1.3e-15
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 305 79.4 1.3e-15
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 303 79.0 2.2e-15
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 294 76.8 7.7e-15
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 286 75.0 2.9e-14
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 284 74.4 3.6e-14
CCDS74734.1 UBE2C gene_id:11065|Hs108|chr20 ( 132) 279 73.2 7e-14
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 277 72.9 1.5e-13
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 273 71.8 1.6e-13
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 274 72.1 1.8e-13
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 267 70.5 6.4e-13
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 263 69.6 1.3e-12
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 243 64.8 2.8e-11
>>CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 (179 aa)
initn: 1197 init1: 1197 opt: 1197 Z-score: 1527.7 bits: 289.2 E(32554): 8.9e-79
Smith-Waterman score: 1197; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)
10 20 30 40 50 60
pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
130 140 150 160 170
>>CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 (140 aa)
initn: 947 init1: 947 opt: 947 Z-score: 1211.5 bits: 230.4 E(32554): 3.7e-61
Smith-Waterman score: 947; 100.0% identity (100.0% similar) in 140 aa overlap (40-179:1-140)
10 20 30 40 50 60
pF1KE3 ATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGA
::::::::::::::::::::::::::::::
CCDS13 MTLMMSGDKGISAFPESDNLFKWVGTIHGA
10 20 30
70 80 90 100 110 120
pF1KE3 AGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVR
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 TILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
100 110 120 130 140
>>CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 (150 aa)
initn: 985 init1: 724 opt: 724 Z-score: 927.6 bits: 177.9 E(32554): 2.4e-45
Smith-Waterman score: 930; 83.8% identity (83.8% similar) in 179 aa overlap (1-179:1-150)
10 20 30 40 50 60
pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
:::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLM-----------------
10 20 30 40
70 80 90 100 110 120
pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ------------VYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
50 60 70 80 90
130 140 150 160 170
pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
100 110 120 130 140 150
>>CCDS13371.1 UBE2C gene_id:11065|Hs108|chr20 (161 aa)
initn: 732 init1: 483 opt: 483 Z-score: 620.8 bits: 121.3 E(32554): 3e-28
Smith-Waterman score: 714; 67.6% identity (76.9% similar) in 182 aa overlap (1-179:1-161)
10 20 30 40 50 60
pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
::::::::::::. ..: . .. . :: . . : :.
CCDS13 KWVGTIHGAAGTAVGSIRTSSTVCLLSGPRETQDSSKPLV--------------------
70 80 90 100
130 140 150 160 170
pF1KE3 KWSALYDVRTIL-LSIQSLLG--EPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQ
:. .:.: .: :..: .: :::::::::::::::::::::::::::::::::::::
CCDS13 -WGLGWDMRLLLELTLQLFLQMPEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQ
110 120 130 140 150
pF1KE3 EP
::
CCDS13 EP
160
>>CCDS74733.1 UBE2C gene_id:11065|Hs108|chr20 (79 aa)
initn: 473 init1: 473 opt: 473 Z-score: 612.6 bits: 118.7 E(32554): 8.5e-28
Smith-Waterman score: 473; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)
10 20 30 40 50 60
pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
::::::::::::
CCDS74 KWVGTIHGAAGTNPTLIVP
70
>>CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 (152 aa)
initn: 346 init1: 331 opt: 411 Z-score: 529.6 bits: 104.3 E(32554): 3.5e-23
Smith-Waterman score: 411; 44.9% identity (72.8% similar) in 136 aa overlap (30-164:4-139)
10 20 30 40 50 60
pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
:. .::.... :. . :.:. : .:..
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIM
10 20 30
70 80 90 100 110 120
pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
.: ..: : :: .:: .:: .:: :: . :::.::. .:::: ..:.::::::..
CCDS41 QWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVTSQEP
.:: ::: .:: :::::: ::: .:: :..::.:.. : ..:
CCDS41 RWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
100 110 120 130 140 150
>>CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX (152 aa)
initn: 347 init1: 331 opt: 408 Z-score: 525.8 bits: 103.6 E(32554): 5.8e-23
Smith-Waterman score: 408; 44.1% identity (72.8% similar) in 136 aa overlap (30-164:4-139)
10 20 30 40 50 60
pF1KE3 MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLF
:. .::.... :. . :.:. : .:..
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIM
10 20 30
70 80 90 100 110 120
pF1KE3 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKE
: ..: : :: .:: .::..:: :: . :::.:.. .:::: ..:.::::::..
CCDS14 VWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVTSQEP
.:: ::: .:: :::::: ::: .:: :..::.:.. : ..:
CCDS14 RWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC
100 110 120 130 140 150
>>CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 (152 aa)
initn: 351 init1: 318 opt: 366 Z-score: 472.4 bits: 93.7 E(32554): 5.4e-20
Smith-Waterman score: 366; 45.0% identity (65.9% similar) in 129 aa overlap (33-161:6-134)
10 20 30 40 50 60
pF1KE3 SQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKW
.:. .: . :. ::.: :. .: .
CCDS31 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYF
10 20 30
70 80 90 100 110 120
pF1KE3 VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKW
.: : . .: .:: : .: ::. :: :.:.: :::::: : :::::::.::
CCDS31 HVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKW
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 SALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP
: ..::.:::::.::. :: :.:: . .:: ::. :
CCDS31 SPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
100 110 120 130 140 150
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 349 init1: 349 opt: 362 Z-score: 467.5 bits: 92.8 E(32554): 1e-19
Smith-Waterman score: 362; 39.0% identity (66.7% similar) in 141 aa overlap (33-172:4-144)
10 20 30 40 50 60
pF1KE3 SQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKW
::.:.:: :. . :: : .:.::.:
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHW
10 20 30
70 80 90 100 110 120
pF1KE3 VGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKW
.:: : ..:. . :...::. ::.. : . : : ::::....:.::::::. .:
CCDS72 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQW
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 SALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVTSQEP
: : .:::: ::: .:: :.:: :...: . .... .: .:
CCDS72 SPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM
100 110 120 130 140
>>CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX (119 aa)
initn: 331 init1: 331 opt: 356 Z-score: 461.2 bits: 91.3 E(32554): 2.3e-19
Smith-Waterman score: 356; 50.0% identity (75.0% similar) in 104 aa overlap (62-164:3-106)
40 50 60 70 80 90
pF1KE3 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY
: ..: : :: .:: .::..:: ::
CCDS78 MVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPN
10 20 30
100 110 120 130 140 150
pF1KE3 NAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTH
. :::.:.. .:::: ..:.::::::...:: ::: .:: :::::: ::: .:: :..
CCDS78 KPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQ
40 50 60 70 80 90
160 170
pF1KE3 AAELWK-NPTAFKKYLQETYSKQVTSQEP
::.:.. : ..:
CCDS78 AAQLYQENKREYEKRVSAIVEQSWRDC
100 110
179 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 22:49:27 2016 done: Sun Nov 6 22:49:27 2016
Total Scan time: 2.010 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]