Result of FASTA (omim) for
pFN21AE3594
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3594, 174 aa
1>>>pF1KE3594 174 - 174 aa - 174 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7614+/-0.000278; mu= 16.3824+/- 0.017
mean_var=69.0971+/-14.087, 0's: 0 Z-trim(119.9): 6 B-trim: 1398 in 1/52
Lambda= 0.154292
statistics sampled from 34398 (34404) to 34398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.403), width: 16
Scan time: 5.500
The best scores are: opt bits E(85289)
NP_006672 (OMIM: 605103) neuromedin-U isoform 1 pr ( 174) 1189 272.6 2.3e-73
XP_011532670 (OMIM: 605103) PREDICTED: neuromedin- ( 140) 936 216.2 1.7e-56
NP_001278975 (OMIM: 605103) neuromedin-U isoform 3 ( 149) 823 191.1 6.8e-49
XP_011532669 (OMIM: 605103) PREDICTED: neuromedin- ( 157) 689 161.2 6.7e-40
NP_001278974 (OMIM: 605103) neuromedin-U isoform 2 ( 158) 684 160.1 1.5e-39
>>NP_006672 (OMIM: 605103) neuromedin-U isoform 1 prepro (174 aa)
initn: 1189 init1: 1189 opt: 1189 Z-score: 1438.2 bits: 272.6 E(85289): 2.3e-73
Smith-Waterman score: 1189; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)
10 20 30 40 50 60
pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
130 140 150 160 170
>>XP_011532670 (OMIM: 605103) PREDICTED: neuromedin-U is (140 aa)
initn: 936 init1: 936 opt: 936 Z-score: 1135.1 bits: 216.2 E(85289): 1.7e-56
Smith-Waterman score: 936; 100.0% identity (100.0% similar) in 137 aa overlap (38-174:4-140)
10 20 30 40 50 60
pF1KE3 RPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDDTCSSFLS
::::::::::::::::::::::::::::::
XP_011 METGAPILPQGLQPEQQLQLWNEIDDTCSSFLS
10 20 30
70 80 90 100 110 120
pF1KE3 IDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVVSSVVHPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVVSSVVHPL
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 LQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
100 110 120 130 140
>>NP_001278975 (OMIM: 605103) neuromedin-U isoform 3 pre (149 aa)
initn: 819 init1: 819 opt: 823 Z-score: 998.8 bits: 191.1 E(85289): 6.8e-49
Smith-Waterman score: 959; 85.6% identity (85.6% similar) in 174 aa overlap (1-174:1-149)
10 20 30 40 50 60
pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
:::::::::::::::::::::::::::::
NP_001 -------------------------EEFQSPFASQSRGYFLFRPRNGRRSAGFI
130 140
>>XP_011532669 (OMIM: 605103) PREDICTED: neuromedin-U is (157 aa)
initn: 689 init1: 689 opt: 689 Z-score: 837.3 bits: 161.2 E(85289): 6.7e-40
Smith-Waterman score: 689; 100.0% identity (100.0% similar) in 102 aa overlap (73-174:56-157)
50 60 70 80 90 100
pF1KE3 PQGLQPEQQLQLWNEIDDTCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTK
::::::::::::::::::::::::::::::
XP_011 RKALLLQPSFCCERNQRIPTVLIIYRRILFQASNALEELCFMIMGMLPKPQEQDEKDNTK
30 40 50 60 70 80
110 120 130 140 150 160
pF1KE3 RFLFHYSKTQKLGKSNVVSSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFLFHYSKTQKLGKSNVVSSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLF
90 100 110 120 130 140
170
pF1KE3 RPRNGRRSAGFI
::::::::::::
XP_011 RPRNGRRSAGFI
150
>>NP_001278974 (OMIM: 605103) neuromedin-U isoform 2 pre (158 aa)
initn: 711 init1: 684 opt: 684 Z-score: 831.2 bits: 160.1 E(85289): 1.5e-39
Smith-Waterman score: 1038; 90.8% identity (90.8% similar) in 174 aa overlap (1-174:1-158)
10 20 30 40 50 60
pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNE---
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 -------------ASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
60 70 80 90 100
130 140 150 160 170
pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
110 120 130 140 150
174 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:38:09 2016 done: Mon Nov 7 01:38:10 2016
Total Scan time: 5.500 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]