FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3594, 174 aa
  1>>>pF1KE3594 174 - 174 aa - 174 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9866+/-0.000568; mu= 14.9518+/- 0.034
 mean_var=67.8261+/-13.561, 0's: 0 Z-trim(113.4): 8  B-trim: 748 in 1/51
 Lambda= 0.155731
 statistics sampled from 14013 (14018) to 14013 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.431), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS3501.1 NMU gene_id:10874|Hs108|chr4            ( 174) 1189 274.9 1.7e-74
CCDS77914.1 NMU gene_id:10874|Hs108|chr4           ( 149)  823 192.7 8.6e-50
CCDS75125.1 NMU gene_id:10874|Hs108|chr4           ( 158)  684 161.4 2.3e-40


>>CCDS3501.1 NMU gene_id:10874|Hs108|chr4                 (174 aa)
 initn: 1189 init1: 1189 opt: 1189  Z-score: 1450.9  bits: 274.9 E(32554): 1.7e-74
Smith-Waterman score: 1189; 100.0% identity (100.0% similar) in 174 aa overlap (1-174:1-174)

               10        20        30        40        50        60
pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
               70        80        90       100       110       120

              130       140       150       160       170    
pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
              130       140       150       160       170    

>>CCDS77914.1 NMU gene_id:10874|Hs108|chr4                (149 aa)
 initn: 819 init1: 819 opt: 823  Z-score: 1007.4  bits: 192.7 E(32554): 8.6e-50
Smith-Waterman score: 959; 85.6% identity (85.6% similar) in 174 aa overlap (1-174:1-149)

               10        20        30        40        50        60
pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
               70        80        90       100       110       120

              130       140       150       160       170    
pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
                                :::::::::::::::::::::::::::::
CCDS77 -------------------------EEFQSPFASQSRGYFLFRPRNGRRSAGFI
                                       130       140         

>>CCDS75125.1 NMU gene_id:10874|Hs108|chr4                (158 aa)
 initn: 711 init1: 684 opt: 684  Z-score: 838.3  bits: 161.4 E(32554): 2.3e-40
Smith-Waterman score: 1038; 90.8% identity (90.8% similar) in 174 aa overlap (1-174:1-158)

               10        20        30        40        50        60
pF1KE3 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNEIDD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS75 MLRTESCRPRSPAGQVAAASPLLLLLLLLAWCAGACRGAPILPQGLQPEQQLQLWNE---
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE3 TCSSFLSIDSQPQASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 -------------ASNALEELCFMIMGMLPKPQEQDEKDNTKRFLFHYSKTQKLGKSNVV
                     60        70        80        90       100    

              130       140       150       160       170    
pF1KE3 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SSVVHPLLQLVPHLHERRMKRFRVDEEFQSPFASQSRGYFLFRPRNGRRSAGFI
          110       120       130       140       150        




174 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:38:08 2016 done: Mon Nov  7 01:38:09 2016
 Total Scan time:  2.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]