Result of FASTA (omim) for
pFN21AE3591
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3591, 423 aa
1>>>pF1KE3591 423 - 423 aa - 423 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0214+/-0.000426; mu= 13.2740+/- 0.026
mean_var=88.4584+/-18.918, 0's: 0 Z-trim(111.9): 139 B-trim: 675 in 1/52
Lambda= 0.136366
statistics sampled from 20436 (20601) to 20436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.242), width: 16
Scan time: 8.980
The best scores are: opt bits E(85289)
NP_036289 (OMIM: 605652) F-box/LRR-repeat protein ( 423) 2874 576.0 6.3e-164
NP_116264 (OMIM: 609086) F-box/LRR-repeat protein ( 436) 2372 477.2 3.5e-134
XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 473) 2372 477.2 3.7e-134
XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 454) 2209 445.2 1.6e-124
XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 2071 417.9 1.8e-116
XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318) 2071 417.9 1.8e-116
NP_001171835 (OMIM: 609086) F-box/LRR-repeat prote ( 404) 1548 315.1 2.1e-85
XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 441) 1548 315.1 2.2e-85
NP_001165184 (OMIM: 605652) F-box/LRR-repeat prote ( 355) 1537 312.9 8.3e-85
XP_016861581 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1406 287.1 4.7e-77
XP_016861582 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1406 287.1 4.7e-77
XP_005265072 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1406 287.1 4.7e-77
XP_011531861 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1406 287.1 4.7e-77
XP_005265073 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349) 1406 287.1 4.7e-77
XP_011514234 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 639) 585 125.8 3.2e-28
XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 444) 527 114.2 6.5e-25
NP_001265246 (OMIM: 605656) F-box/LRR-repeat prote ( 444) 527 114.2 6.5e-25
XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 486) 527 114.3 7e-25
NP_036436 (OMIM: 605656) F-box/LRR-repeat protein ( 491) 527 114.3 7.1e-25
XP_006715961 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 584) 468 102.7 2.5e-21
XP_016867342 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 468 102.8 3.1e-21
XP_011514232 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 468 102.8 3.1e-21
XP_005250266 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735) 468 102.8 3.1e-21
NP_659469 (OMIM: 609080) F-box/LRR-repeat protein ( 735) 468 102.8 3.1e-21
XP_016867341 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780) 468 102.8 3.2e-21
XP_005250264 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 792) 468 102.8 3.3e-21
XP_016867339 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 822) 468 102.8 3.4e-21
XP_005250262 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 825) 468 102.8 3.4e-21
XP_011514231 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 783) 462 101.6 7.3e-21
XP_016867340 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 809) 462 101.6 7.5e-21
XP_016866217 (OMIM: 605654,615471) PREDICTED: F-bo ( 379) 378 84.9 3.8e-16
NP_001265645 (OMIM: 605654,615471) F-box/LRR-repea ( 621) 378 85.0 5.7e-16
NP_036292 (OMIM: 605654,615471) F-box/LRR-repeat p ( 621) 378 85.0 5.7e-16
XP_016866215 (OMIM: 605654,615471) PREDICTED: F-bo ( 621) 378 85.0 5.7e-16
NP_001274079 (OMIM: 609080) F-box/LRR-repeat prote ( 707) 352 79.9 2.2e-14
NP_699181 (OMIM: 609082) F-box/LRR-repeat protein ( 479) 349 79.2 2.4e-14
XP_011514230 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 797) 352 80.0 2.4e-14
XP_016874365 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 387) 341 77.6 6e-14
XP_016874364 (OMIM: 609081) PREDICTED: F-box/LRR-r ( 404) 341 77.6 6.2e-14
NP_689654 (OMIM: 609081) F-box/LRR-repeat protein ( 418) 341 77.6 6.4e-14
NP_001156787 (OMIM: 609083) F-box/LRR-repeat prote ( 701) 340 77.6 1.1e-13
XP_005272105 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 712) 340 77.6 1.1e-13
XP_011541876 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 621) 329 75.4 4.6e-13
XP_011541877 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 618) 326 74.8 6.8e-13
XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 582) 317 73.0 2.2e-12
XP_011541879 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 589) 317 73.0 2.2e-12
XP_011541878 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 610) 317 73.0 2.3e-12
XP_016865218 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 567) 273 64.3 8.8e-10
XP_005272107 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 505) 221 54.1 9.6e-07
XP_011541881 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 513) 221 54.1 9.7e-07
>>NP_036289 (OMIM: 605652) F-box/LRR-repeat protein 2 is (423 aa)
initn: 2874 init1: 2874 opt: 2874 Z-score: 3064.0 bits: 576.0 E(85289): 6.3e-164
Smith-Waterman score: 2874; 100.0% identity (100.0% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KE3 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 CRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILIT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 HLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCC
370 380 390 400 410 420
pF1KE3 VIL
:::
NP_036 VIL
>>NP_116264 (OMIM: 609086) F-box/LRR-repeat protein 20 i (436 aa)
initn: 2372 init1: 2372 opt: 2372 Z-score: 2530.1 bits: 477.2 E(85289): 3.5e-134
Smith-Waterman score: 2372; 78.2% identity (94.5% similar) in 422 aa overlap (2-423:15-436)
10 20 30 40
pF1KE3 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILAL
.:::.::..::::::::::::::::::.::::::::.:.:::.:::
NP_116 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 DGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIE
:::::::::::.:: :.::::::::::::::::::::::::.::::..:.::::::::::
NP_116 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCD
:::::::: ::.:: :::.:::::.::::.::.:::: :::..:::: :: ::.::::
NP_116 VLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 QITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVV
:.:::::.:::::: :::::.:.:::::::::::.: .: :::.::::.: .:::::..
NP_116 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHE
::::::.::.:: :::::.::: :.::: :::::.:::.::::.:::.::: :::::::
NP_116 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE3 LEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLE
:::::::::. ::::::::::::::.::.:::::::::::::: ::.:..:.:..:.:.:
NP_116 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE3 LDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPT
:::: ::::..::::..:..:::.:::::::.:::::::.:..::..::::::::::::
NP_116 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
370 380 390 400 410 420
410 420
pF1KE3 AVAGSGQRLCRCCVIL
.:.:: ::.::::.::
NP_116 SVGGSRQRFCRCCIIL
430
>>XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-repea (473 aa)
initn: 2372 init1: 2372 opt: 2372 Z-score: 2529.5 bits: 477.2 E(85289): 3.7e-134
Smith-Waterman score: 2372; 78.2% identity (94.5% similar) in 422 aa overlap (2-423:52-473)
10 20 30
pF1KE3 MVFSNNDEGLINKKLPKELLLRIFSFLDIVT
.:::.::..::::::::::::::::::.::
XP_005 AALPQSRHIQKRRKMAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRIFSFLDVVT
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 LCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGV
::::::.:.:::.::::::::::::::.:: :.::::::::::::::::::::::::.::
XP_005 LCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGV
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE3 GDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGI
::..:.:::::::::: :::::::: ::.:: :::.:::::.::::.::.:::: :::..
XP_005 GDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKAL
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE3 SEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELV
:::: :: ::.:::::.:::::.:::::: :::::.:.:::::::::::.: .: :::
XP_005 SEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELV
210 220 230 240 250 260
220 230 240 250 260 270
pF1KE3 SLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCS
.::::.: .:::::.. ::::::.::.:: :::::.::: :.::: :::::.:::.::::
XP_005 TLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCS
270 280 290 300 310 320
280 290 300 310 320 330
pF1KE3 HLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGIL
.:::.::: ::::::::::::::::. ::::::::::::::.::.::::::::::::::
XP_005 QLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIR
330 340 350 360 370 380
340 350 360 370 380 390
pF1KE3 HLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQL
::.:..:.:..:.:.::::: ::::..::::..:..:::.:::::::.:::::::.:..:
XP_005 HLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHL
390 400 410 420 430 440
400 410 420
pF1KE3 PHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
:..:::::::::::: .:.:: ::.::::.::
XP_005 PNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
450 460 470
>>XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-repea (454 aa)
initn: 2860 init1: 2145 opt: 2209 Z-score: 2356.5 bits: 445.2 E(85289): 1.6e-124
Smith-Waterman score: 2802; 93.2% identity (93.2% similar) in 454 aa overlap (1-423:1-454)
10 20 30 40 50 60
pF1KE3 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILIT
250 260 270 280 290 300
310 320
pF1KE3 DSTLIQLSIHCPKLQAL-------------------------------SLSHCELITDDG
::::::::::::::::: ::::::::::::
XP_005 DSTLIQLSIHCPKLQALVSLSFSDIIHLLKMKEPSHHNKKLFGFSFCKSLSHCELITDDG
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE3 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
370 380 390 400 410 420
390 400 410 420
pF1KE3 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
::::::::::::::::::::::::::::::::::
XP_005 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
430 440 450
>>XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 2071 init1: 2071 opt: 2071 Z-score: 2212.0 bits: 417.9 E(85289): 1.8e-116
Smith-Waterman score: 2071; 100.0% identity (100.0% similar) in 304 aa overlap (120-423:15-318)
90 100 110 120 130 140
pF1KE3 GVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
::::::::::::::::::::::::::::::
XP_005 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
10 20 30 40
150 160 170 180 190 200
pF1KE3 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
50 60 70 80 90 100
210 220 230 240 250 260
pF1KE3 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
110 120 130 140 150 160
270 280 290 300 310 320
pF1KE3 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDG
170 180 190 200 210 220
330 340 350 360 370 380
pF1KE3 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
230 240 250 260 270 280
390 400 410 420
pF1KE3 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
::::::::::::::::::::::::::::::::::
XP_005 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
290 300 310
>>XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-repea (318 aa)
initn: 2071 init1: 2071 opt: 2071 Z-score: 2212.0 bits: 417.9 E(85289): 1.8e-116
Smith-Waterman score: 2071; 100.0% identity (100.0% similar) in 304 aa overlap (120-423:15-318)
90 100 110 120 130 140
pF1KE3 GVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
::::::::::::::::::::::::::::::
XP_016 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
10 20 30 40
150 160 170 180 190 200
pF1KE3 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
50 60 70 80 90 100
210 220 230 240 250 260
pF1KE3 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
110 120 130 140 150 160
270 280 290 300 310 320
pF1KE3 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDG
170 180 190 200 210 220
330 340 350 360 370 380
pF1KE3 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILHLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRA
230 240 250 260 270 280
390 400 410 420
pF1KE3 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
::::::::::::::::::::::::::::::::::
XP_016 QLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
290 300 310
>>NP_001171835 (OMIM: 609086) F-box/LRR-repeat protein 2 (404 aa)
initn: 2195 init1: 1487 opt: 1548 Z-score: 1654.4 bits: 315.1 E(85289): 2.1e-85
Smith-Waterman score: 2135; 72.5% identity (87.4% similar) in 422 aa overlap (2-423:15-404)
10 20 30 40
pF1KE3 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILAL
.:::.::..::::::::::::::::::.::::::::.:.:::.:::
NP_001 MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLAL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 DGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIE
:::::::::::.:: :.::::::::::::::::::::::::.::::..:.::::::::::
NP_001 DGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 HLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCD
:::::::: ::. ::: :: ::.::::
NP_001 VLNLNGCTKTTDA--------------------------------EGCPLLEQLNISWCD
130 140
170 180 190 200 210 220
pF1KE3 QITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVV
:.:::::.:::::: :::::.:.:::::::::::.: .: :::.::::.: .:::::..
NP_001 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI
150 160 170 180 190 200
230 240 250 260 270 280
pF1KE3 QICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHE
::::::.::.:: :::::.::: :.::: :::::.:::.::::.:::.::: :::::::
NP_001 TICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHE
210 220 230 240 250 260
290 300 310 320 330 340
pF1KE3 LEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLE
:::::::::. ::::::::::::::.::.:::::::::::::: ::.:..:.:..:.:.:
NP_001 LEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIE
270 280 290 300 310 320
350 360 370 380 390 400
pF1KE3 LDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPT
:::: ::::..::::..:..:::.:::::::.:::::::.:..::..::::::::::::
NP_001 LDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPP
330 340 350 360 370 380
410 420
pF1KE3 AVAGSGQRLCRCCVIL
.:.:: ::.::::.::
NP_001 SVGGSRQRFCRCCIIL
390 400
>>XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-repea (441 aa)
initn: 2195 init1: 1487 opt: 1548 Z-score: 1653.9 bits: 315.1 E(85289): 2.2e-85
Smith-Waterman score: 2135; 72.5% identity (87.4% similar) in 422 aa overlap (2-423:52-441)
10 20 30
pF1KE3 MVFSNNDEGLINKKLPKELLLRIFSFLDIVT
.:::.::..::::::::::::::::::.::
XP_005 AALPQSRHIQKRRKMAPSRDRLLHFGFKATMFSNSDEAVINKKLPKELLLRIFSFLDVVT
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 LCRCAQISKAWNILALDGSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGV
::::::.:.:::.::::::::::::::.:: :.::::::::::::::::::::::::.::
XP_005 LCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGV
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE3 GDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGI
::..:.:::::::::: :::::::: ::.
XP_005 GDNALRTFAQNCRNIEVLNLNGCTKTTDA-------------------------------
150 160 170
160 170 180 190 200 210
pF1KE3 SEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELV
::: :: ::.:::::.:::::.:::::: :::::.:.:::::::::::.: .: :::
XP_005 -EGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELV
180 190 200 210 220
220 230 240 250 260 270
pF1KE3 SLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCS
.::::.: .:::::.. ::::::.::.:: :::::.::: :.::: :::::.:::.::::
XP_005 TLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCS
230 240 250 260 270 280
280 290 300 310 320 330
pF1KE3 HLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGIL
.:::.::: ::::::::::::::::. ::::::::::::::.::.::::::::::::::
XP_005 QLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIR
290 300 310 320 330 340
340 350 360 370 380 390
pF1KE3 HLSNSTCGHERLRVLELDNCLLITDVALEHLENCRGLERLELYDCQQVTRAGIKRMRAQL
::.:..:.:..:.:.::::: ::::..::::..:..:::.:::::::.:::::::.:..:
XP_005 HLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHL
350 360 370 380 390 400
400 410 420
pF1KE3 PHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
:..:::::::::::: .:.:: ::.::::.::
XP_005 PNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
410 420 430 440
>>NP_001165184 (OMIM: 605652) F-box/LRR-repeat protein 2 (355 aa)
initn: 1531 init1: 1531 opt: 1537 Z-score: 1643.6 bits: 312.9 E(85289): 8.3e-85
Smith-Waterman score: 2273; 83.9% identity (83.9% similar) in 423 aa overlap (1-423:1-355)
10 20 30 40 50 60
pF1KE3 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRIDLFNF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRG
::::::::::::::
NP_001 TCYSLSRFCSKLKH----------------------------------------------
130
190 200 210 220 230 240
pF1KE3 CRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALC
::::::::::::::::::::::::::::::::::::::
NP_001 ----------------------IQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALC
140 150 160 170
250 260 270 280 290 300
pF1KE3 LSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILIT
180 190 200 210 220 230
310 320 330 340 350 360
pF1KE3 DSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVALE
240 250 260 270 280 290
370 380 390 400 410 420
pF1KE3 HLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCC
300 310 320 330 340 350
pF1KE3 VIL
:::
NP_001 VIL
>>XP_016861581 (OMIM: 605652) PREDICTED: F-box/LRR-repea (349 aa)
initn: 2057 init1: 1342 opt: 1406 Z-score: 1504.4 bits: 287.1 E(85289): 4.7e-77
Smith-Waterman score: 1999; 90.7% identity (90.7% similar) in 335 aa overlap (120-423:15-349)
90 100 110 120 130 140
pF1KE3 GVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
::::::::::::::::::::::::::::::
XP_016 MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLK
10 20 30 40
150 160 170 180 190 200
pF1KE3 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHE
50 60 70 80 90 100
210 220 230 240 250 260
pF1KE3 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAAR
110 120 130 140 150 160
270 280 290 300 310
pF1KE3 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQAL------------
::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALVSLSFSDIIHLL
170 180 190 200 210 220
320 330 340 350
pF1KE3 -------------------SLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVA
:::::::::::::::::::::::::::::::::::::::::
XP_016 KMKEPSHHNKKLFGFSFCKSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDVA
230 240 250 260 270 280
360 370 380 390 400 410
pF1KE3 LEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEHLENCRGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVTPPTAVAGSGQRLCR
290 300 310 320 330 340
420
pF1KE3 CCVIL
:::::
XP_016 CCVIL
423 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:09:15 2016 done: Mon Nov 7 00:09:17 2016
Total Scan time: 8.980 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]