FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3585, 531 aa
  1>>>pF1KE3585 531 - 531 aa - 531 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2748+/-0.00124; mu= -2.8566+/- 0.075
 mean_var=316.1477+/-62.579, 0's: 0 Z-trim(111.6): 27  B-trim: 26 in 1/50
 Lambda= 0.072132
 statistics sampled from 12458 (12472) to 12458 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.383), width:  16
 Scan time:  3.760

The best scores are:                                      opt bits E(32554)
CCDS12533.1 PAF1 gene_id:54623|Hs108|chr19         ( 531) 3523 380.5 2.6e-105
CCDS59387.1 PAF1 gene_id:54623|Hs108|chr19         ( 485) 2457 269.6   6e-72


>>CCDS12533.1 PAF1 gene_id:54623|Hs108|chr19              (531 aa)
 initn: 3523 init1: 3523 opt: 3523  Z-score: 2004.2  bits: 380.5 E(32554): 2.6e-105
Smith-Waterman score: 3523; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531)

               10        20        30        40        50        60
pF1KE3 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESER
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDN
              430       440       450       460       470       480

              490       500       510       520       530 
pF1KE3 DSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD
              490       500       510       520       530 

>>CCDS59387.1 PAF1 gene_id:54623|Hs108|chr19              (485 aa)
 initn: 2455 init1: 2455 opt: 2457  Z-score: 1405.2  bits: 269.6 E(32554): 6e-72
Smith-Waterman score: 2527; 97.5% identity (97.5% similar) in 394 aa overlap (1-394:1-384)

               10        20        30        40        50        60
pF1KE3 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ
       ::::::::::::::::          ::::::::::::::::::::::::::::::::::
CCDS59 MAPTIQTQAQREDGHR----------SGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ
               10                  20        30        40        50

               70        80        90       100       110       120
pF1KE3 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR
               60        70        80        90       100       110

              130       140       150       160       170       180
pF1KE3 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE
              120       130       140       150       160       170

              190       200       210       220       230       240
pF1KE3 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM
              180       190       200       210       220       230

              250       260       270       280       290       300
pF1KE3 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK
              240       250       260       270       280       290

              310       320       330       340       350       360
pF1KE3 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE
              300       310       320       330       340       350

              370       380       390       400       410       420
pF1KE3 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESER
       ::::::::::::::::::::::::::::::::::                          
CCDS59 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSVMLILRTMPTLMMRTEDRPKVAVTMI
              360       370       380       390       400       410

              430       440       450       460       470       480
pF1KE3 EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDN
                                                                   
CCDS59 QTAAAMGVASGAGATAAAPVPSPVAASTRPRRMAVKLQLLIPVKLIVTVTESQGIQGWFR
              420       430       440       450       460       470




531 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:07:29 2016 done: Sun Nov  6 06:07:29 2016
 Total Scan time:  3.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]