FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3582, 558 aa
  1>>>pF1KE3582 558 - 558 aa - 558 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5808+/-0.00104; mu= 16.7680+/- 0.063
 mean_var=62.0899+/-12.680, 0's: 0 Z-trim(102.8): 26  B-trim: 2 in 1/49
 Lambda= 0.162766
 statistics sampled from 7087 (7097) to 7087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.218), width:  16
 Scan time:  3.180

The best scores are:                                      opt bits E(32554)
CCDS12437.1 GPI gene_id:2821|Hs108|chr19           ( 558) 3752 890.1       0
CCDS54246.1 GPI gene_id:2821|Hs108|chr19           ( 569) 2680 638.4  7e-183


>>CCDS12437.1 GPI gene_id:2821|Hs108|chr19                (558 aa)
 initn: 3752 init1: 3752 opt: 3752  Z-score: 4757.4  bits: 890.1 E(32554):    0
Smith-Waterman score: 3752; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)

               10        20        30        40        50        60
pF1KE3 MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 VWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 KHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 HWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 GKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 HHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 KLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDA
              490       500       510       520       530       540

              550        
pF1KE3 STNGLINFIKQQREARVQ
       ::::::::::::::::::
CCDS12 STNGLINFIKQQREARVQ
              550        

>>CCDS54246.1 GPI gene_id:2821|Hs108|chr19                (569 aa)
 initn: 3550 init1: 2680 opt: 2680  Z-score: 3396.8  bits: 638.4 E(32554): 7e-183
Smith-Waterman score: 3498; 95.0% identity (95.0% similar) in 558 aa overlap (1-558:40-569)

                                             10        20        30
pF1KE3                               MAALTRDPQFQKLQQWYREHRSELNLRRLF
                                     ::::::::::::::::::::::::::::::
CCDS54 LGSSDPRALPTLPTATSGQRPAKRRRKSPAMAALTRDPQFQKLQQWYREHRSELNLRRLF
      10        20        30        40        50        60         

               40        50        60        70        80        90
pF1KE3 DANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKI
      70        80        90       100       110       120         

              100       110       120       130       140       150
pF1KE3 NYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQRVRSGDWKGYTGKTIT
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS54 NYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQ----------------
     130       140       150       160       170                   

              160       170       180       190       200       210
pF1KE3 DVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIAS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ------------GPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIAS
                       180       190       200       210       220 

              220       230       240       250       260       270
pF1KE3 KTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFGIDPQNMFEFWDWV
             230       240       250       260       270       280 

              280       290       300       310       320       330
pF1KE3 GGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGRYSLWSAIGLSIALHVGFDNFEQLLSGAHWMDQHFRTTPLEKNAPVLLALLGIWYINC
             290       300       310       320       330       340 

              340       350       360       370       380       390
pF1KE3 FGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQTGPIVWGEPGTNGQHA
             350       360       370       380       390       400 

              400       410       420       430       440       450
pF1KE3 FYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMRGKSTEEARKELQ
             410       420       430       440       450       460 

              460       470       480       490       500       510
pF1KE3 AAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AAGKSPEDLERLLPHKVFEGNRPTNSIVFTKLTPFMLGALVAMYEHKIFVQGIIWDINSF
             470       480       490       500       510       520 

              520       530       540       550        
pF1KE3 DQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DQWGVELGKQLAKKIEPELDGSAQVTSHDASTNGLINFIKQQREARVQ
             530       540       550       560         




558 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:25:05 2016 done: Mon Nov  7 02:25:06 2016
 Total Scan time:  3.180 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]