FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3544, 412 aa
  1>>>pF1KE3544 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.2065+/-0.000919; mu= -7.6374+/- 0.055
 mean_var=354.3088+/-73.041, 0's: 0 Z-trim(117.1): 18  B-trim: 164 in 1/53
 Lambda= 0.068137
 statistics sampled from 17790 (17808) to 17790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.547), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22         ( 412) 2767 285.2 7.8e-77
CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22         ( 394) 2128 222.4 6.1e-58
CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17         ( 389)  613 73.4 4.1e-13


>>CCDS13980.1 CBX6 gene_id:23466|Hs108|chr22              (412 aa)
 initn: 2767 init1: 2767 opt: 2767  Z-score: 1492.9  bits: 285.2 E(32554): 7.8e-77
Smith-Waterman score: 2767; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KE3 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KE3 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK
              370       380       390       400       410  

>>CCDS77675.1 CBX6 gene_id:23466|Hs108|chr22              (394 aa)
 initn: 2128 init1: 2128 opt: 2128  Z-score: 1153.7  bits: 222.4 E(32554): 6.1e-58
Smith-Waterman score: 2612; 95.6% identity (95.6% similar) in 412 aa overlap (1-412:1-394)

               10        20        30        40        50        60
pF1KE3 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLK
       ::::::::::::::::::::::                  ::::::::::::::::::::
CCDS77 ERERELYGPKKRGPKPKTFLLK------------------PSASASSPKLHSSAAVHRLK
               70        80                          90       100  

              130       140       150       160       170       180
pF1KE3 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKV
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KE3 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKPPPA
            170       180       190       200       210       220  

              250       260       270       280       290       300
pF1KE3 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSSGCPSPTPQSSDPDDTPPKLLPETV
            230       240       250       260       270       280  

              310       320       330       340       350       360
pF1KE3 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAAAGPAPPTAPEPAGASSEPEAGDWRP
            290       300       310       320       330       340  

              370       380       390       400       410  
pF1KE3 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKVAAGVAGAAGGGGSIGASK
            350       360       370       380       390    

>>CCDS11765.1 CBX8 gene_id:57332|Hs108|chr17              (389 aa)
 initn: 653 init1: 517 opt: 613  Z-score: 348.9  bits: 73.4 E(32554): 4.1e-13
Smith-Waterman score: 625; 36.3% identity (54.9% similar) in 419 aa overlap (1-393:1-386)

               10        20        30        40        50        60
pF1KE3 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK
       ::::::::::::::...::::::::.:::::::::. :::::::::::::.::.::::..
CCDS11 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KE3 ERERELYGPKKRGPKPKTFLLKARAQAEALRI---SDVHFSVKPSASASSPKLHSSAAVH
       ::: :::::::::::::::::::.:.:.:      ::   ...    . ::.  . :.. 
CCDS11 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQ--DLASTS
               70        80        90       100       110          

       120       130       140       150       160       170       
pF1KE3 RLKKDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILN
       : .. .:                  . :: :: :  : ..    :   ::.  :.:    
CCDS11 RAREGLR------------------NMGLSPPAS--STSTSSTCRAEAPRDRDRDR----
      120                         130         140       150        

       180       190       200       210       220       230       
pF1KE3 LKVIDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKP
        .  ..        .      : .  . .::  : .. ..:  .   .  :     :  :
CCDS11 DRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK----ELPDP
          160       170       180       190       200           210

       240               250       260       270         280       
pF1KE3 PPAPLVAPSPG--------KAEASAPGPGLLLAAPAAPYDARSSGSS--GCPSPTPQSSD
          ::  :: :        : . .  : : . :. ..   :: . :.   :   .:.:..
CCDS11 SQRPLGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQDSDLVQCGVTSPSSAE
              220       230       240       250       260       270

             290       300          310          320       330     
pF1KE3 P------DDTPPKLLPETVS---PSAPSWREPE---VLDLSLPPESAATSKRAPPEVTAA
              :  : ... . ..    .. .  .:.   :   : :: :..   :   .. : 
CCDS11 ATGKLAVDTFPARVIKHRAAFLEAKGQGALDPNGTRVRHGSGPPSSGGGLYR---DMGAQ
              280       290       300       310       320          

         340        350       360       370       380       390    
pF1KE3 AGPAPPTAPEP-AGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEKV
       .:     :  : :   ..::  .: : ..   .:::::::::.:::::::  . . : : 
CCDS11 GGRPSLIARIPVARILGDPEEESWSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFFKE
       330       340       350       360       370       380       

          400       410  
pF1KE3 AAGVAGAAGGGGSIGASK
                         
CCDS11 KR                
                         




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:17:08 2016 done: Tue Nov  8 10:17:08 2016
 Total Scan time:  2.470 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]