Result of FASTA (ccds) for
pFN21AE3534
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3534, 641 aa
1>>>pF1KE3534 641 - 641 aa - 641 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7864+/-0.00089; mu= 13.3379+/- 0.054
mean_var=120.6809+/-24.372, 0's: 0 Z-trim(109.9): 17 B-trim: 18 in 1/52
Lambda= 0.116749
statistics sampled from 11193 (11198) to 11193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.344), width: 16
Scan time: 3.900
The best scores are: opt bits E(32554)
CCDS73660.1 C14orf169 gene_id:79697|Hs108|chr14 ( 641) 4283 732.8 3.4e-211
CCDS43114.1 MINA gene_id:84864|Hs108|chr3 ( 465) 713 131.4 2.7e-30
CCDS2929.1 MINA gene_id:84864|Hs108|chr3 ( 464) 708 130.5 4.9e-30
>>CCDS73660.1 C14orf169 gene_id:79697|Hs108|chr14 (641 aa)
initn: 4283 init1: 4283 opt: 4283 Z-score: 3905.0 bits: 732.8 E(32554): 3.4e-211
Smith-Waterman score: 4283; 99.7% identity (100.0% similar) in 641 aa overlap (1-641:1-641)
10 20 30 40 50 60
pF1KE3 MDGLQASAGPLRRGRPRRRRKPQPHSGSVLALPLRSRKIRKQLRSVVSRMAALRTQTLPS
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS73 MDGLQASAGPLRRGRPKRRRKPQPHSGSVLALPLRSRKIRKQLRSVVSRMAALRTQTLPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ENSEESRVESTADDLGDALPGGAAVAAVPDAARREPYGHLGPAELLEASPAARSLQTPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ENSEESRVESTADDLGDALPGGAAVAAVPDAARREPYGHLGPAELLEASPAARSLQTPSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RLVPASAPPARLVEVPAAPVRVVETSALLCTAQHLAAVQSSGAPATASGPQVDNTGGEPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RLVPASAPPARLVEVPAAPVRVVETSALLCTAQHLAAVQSSGAPATASGPQVDNTGGEPA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 WDSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 WDSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTL
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 STYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 STYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 VRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 QLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLG
550 560 570 580 590 600
610 620 630 640
pF1KE3 SYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN
:::::::::::::::::::::::::::::::::::::::::
CCDS73 SYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN
610 620 630 640
>>CCDS43114.1 MINA gene_id:84864|Hs108|chr3 (465 aa)
initn: 657 init1: 280 opt: 713 Z-score: 657.3 bits: 131.4 E(32554): 2.7e-30
Smith-Waterman score: 785; 33.8% identity (62.2% similar) in 474 aa overlap (175-632:8-462)
150 160 170 180 190 200
pF1KE3 TSALLCTAQHLAAVQSSGAPATASGPQVDNTG-GEPAWDSPLRRVLAELNRIPSSRR--R
:: :. .: ... : ::.
CCDS43 MPKKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDS
10 20 30
210 220 230 240 250
pF1KE3 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDH---TYYQGLFSTADLDSMLRNEEVQF
. ::: ::.:. . :....::.. .:..:.: ::: .::. .:: : : .. . .
CCDS43 PSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKS-LCSRGMYY
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE3 GQHLDAARYINGRRETLNPPGRA-LPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQE
:. ... : .::....:: :.: . .. : .... :: :. .:.. :.
CCDS43 GRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLEC
100 110 120 130 140 150
320 330 340 350 360 370
pF1KE3 QFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNF
:::..:::::.:: .:::. :::::.:.:.:::::.: ::.:.: .: :: : .
CCDS43 YFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVP---LAREYSVE-
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 SQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGV-HSLHLTLSTYQRNTWGDFLEAIL
... .:.:: . .:.:::::::::: ::::. :. :: :.:.:::: :.::::: .
CCDS43 AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTI
220 230 240 250 260 270
440 450 460 470 480 490
pF1KE3 PLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDA
: . .:.::.: :.::... . .. . : ..:. :.:. :: . .
CCDS43 SGLVFDTAKEDVELRTGIPRQLL--LQVESTTVATRRLSGFL---RTLADRLE--GTKEL
280 290 300 310 320
500 510 520 530 540 550
pF1KE3 VADQRAKDFIHDSLPPVLTDRERALSVYG--LPIRWEAGEPVNVGAQLTTETEVHMLQDG
.... :::: ::: . ::. : :: : .. : :. . . .: :
CCDS43 LSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLP-RLDS----VVRLQFKDHIVLTVLPDQ
330 340 350 360 370 380
560 570 580 590 600
pF1KE3 IARLVGEGGHLFLYYTVENSRVYHL----EEPKCLEI-YP-QQADAMELLLGSYPEFVRV
.. ...:....::: :. :: . . .: .. ::.. . .: : . :
CCDS43 DQSDEAQEKMVYIYHSLKNSRETHMMGNEEETEFHGLRFPLSHLDALKQIWNS-PA-ISV
390 400 410 420 430
610 620 630 640
pF1KE3 GDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN
:: . :.. ::. .:. . :.
CCDS43 KDLKLTTDEEKESLVLSLWTECLIQVV
440 450 460
>>CCDS2929.1 MINA gene_id:84864|Hs108|chr3 (464 aa)
initn: 657 init1: 280 opt: 708 Z-score: 652.7 bits: 130.5 E(32554): 4.9e-30
Smith-Waterman score: 778; 34.1% identity (62.1% similar) in 475 aa overlap (175-632:8-461)
150 160 170 180 190 200
pF1KE3 TSALLCTAQHLAAVQSSGAPATASGPQVDNTG-GEPAWDSPLRRVLAELNRIPSSRR--R
:: :. .: ... : ::.
CCDS29 MPKKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDS
10 20 30
210 220 230 240 250
pF1KE3 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDH---TYYQGLFSTADLDSMLRNEEVQF
. ::: ::.:. . :....::.. .:..:.: ::: .::. .:: : : .. . .
CCDS29 PSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKS-LCSRGMYY
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE3 GQHLDAARYINGRRETLNPPGRA-LPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQE
:. ... : .::....:: :.: . .. : .... :: :. .:.. :.
CCDS29 GRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLEC
100 110 120 130 140 150
320 330 340 350 360 370
pF1KE3 QFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNF
:::..:::::.:: .:::. :::::.:.:.:::::.: ::.:.: .: :: : .
CCDS29 YFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVP---LAREYSVE-
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 SQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGV-HSLHLTLSTYQRNTWGDFLEAIL
... .:.:: . .:.:::::::::: ::::. :. :: :.:.:::: :.::::: .
CCDS29 AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTI
220 230 240 250 260 270
440 450 460 470 480 490
pF1KE3 PLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRR-TAFMEKVRVLVARLGHFAPVD
: . .:.::.: :.::... .: . :: ..:. :.:. :: . .
CCDS29 SGLVFDTAKEDVELRTGIPRQLLLV----ESTTVATRRLSGFL---RTLADRLE--GTKE
280 290 300 310 320
500 510 520 530 540 550
pF1KE3 AVADQRAKDFIHDSLPPVLTDRERALSVYG--LPIRWEAGEPVNVGAQLTTETEVHMLQD
.... :::: ::: . ::. : :: : .. : :. . . .: :
CCDS29 LLSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLP-RLDS----VVRLQFKDHIVLTVLPD
330 340 350 360 370
560 570 580 590 600
pF1KE3 GIARLVGEGGHLFLYYTVENSRVYHL----EEPKCLEI-YP-QQADAMELLLGSYPEFVR
.. ...:....::: :. :: . . .: .. ::.. . .: : .
CCDS29 QDQSDEAQEKMVYIYHSLKNSRETHMMGNEEETEFHGLRFPLSHLDALKQIWNS-PA-IS
380 390 400 410 420 430
610 620 630 640
pF1KE3 VGDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN
: :: . :.. ::. .:. . :.
CCDS29 VKDLKLTTDEEKESLVLSLWTECLIQVV
440 450 460
641 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:32:03 2016 done: Mon Nov 7 16:32:04 2016
Total Scan time: 3.900 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]