Result of FASTA (ccds) for
pFN21AE3517
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3517, 221 aa
1>>>pF1KE3517 221 - 221 aa - 221 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9502+/-0.000863; mu= 15.0304+/- 0.052
mean_var=68.8924+/-13.692, 0's: 0 Z-trim(106.3): 201 B-trim: 0 in 0/51
Lambda= 0.154521
statistics sampled from 8693 (8922) to 8693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.274), width: 16
Scan time: 1.520
The best scores are: opt bits E(32554)
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX ( 221) 1440 330.0 7.4e-91
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 829 193.8 7.1e-50
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 820 191.7 2.8e-49
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 809 189.3 1.6e-48
CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2 ( 254) 733 172.4 2.3e-43
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 ( 254) 725 170.6 7.8e-43
CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11 ( 175) 718 169.0 1.7e-42
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 465 112.6 1.9e-25
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 465 112.6 1.9e-25
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 465 112.7 2.2e-25
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 463 112.2 2.6e-25
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 461 111.7 3.4e-25
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 432 105.3 3.3e-23
CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18 ( 195) 427 104.1 6.4e-23
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 427 104.1 6.7e-23
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 426 103.9 7.5e-23
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 424 103.5 1.1e-22
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 ( 212) 421 102.8 1.7e-22
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 420 102.6 2e-22
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 419 102.4 2.3e-22
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 419 102.4 2.6e-22
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 ( 219) 416 101.7 3.8e-22
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 416 101.7 3.8e-22
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 ( 227) 412 100.8 7.3e-22
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 411 100.6 7.8e-22
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 405 99.2 2e-21
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 ( 194) 404 99.0 2.2e-21
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 404 99.1 2.7e-21
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 401 98.4 4e-21
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 ( 219) 399 97.9 5.3e-21
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 397 97.4 6.5e-21
CCDS75442.1 RAB44 gene_id:401258|Hs108|chr6 (1021) 405 99.8 6.8e-21
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 389 95.7 2.4e-20
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10 ( 206) 389 95.7 2.4e-20
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 385 94.8 4.4e-20
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 384 94.6 5.2e-20
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 381 93.9 8e-20
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12 ( 731) 387 95.6 8.5e-20
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 378 93.2 1.3e-19
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 378 93.2 1.3e-19
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 ( 212) 377 93.0 1.5e-19
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 377 93.0 1.5e-19
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 377 93.0 1.6e-19
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11 ( 217) 377 93.0 1.6e-19
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 375 92.6 2.1e-19
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 372 91.9 3.4e-19
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1 ( 218) 372 91.9 3.4e-19
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 368 91.0 6e-19
CCDS54162.1 RAB37 gene_id:326624|Hs108|chr17 ( 186) 365 90.3 8.9e-19
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 362 89.7 1.6e-18
>>CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX (221 aa)
initn: 1440 init1: 1440 opt: 1440 Z-score: 1744.7 bits: 330.0 E(32554): 7.4e-91
Smith-Waterman score: 1440; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KE3 MSAFGHDEAWMEAGGFGLEAAERTEYQSLCKSKLLFLGEQSGKTSIISRFMYNSFGCACQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSAFGHDEAWMEAGGFGLEAAERTEYQSLCKSKLLFLGEQSGKTSIISRFMYNSFGCACQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNV
130 140 150 160 170 180
190 200 210 220
pF1KE3 KKLFRRVASALLSTRTSPPPKEGTVEIELESFEESGNRSYC
:::::::::::::::::::::::::::::::::::::::::
CCDS35 KKLFRRVASALLSTRTSPPPKEGTVEIELESFEESGNRSYC
190 200 210 220
>>CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 (208 aa)
initn: 831 init1: 762 opt: 829 Z-score: 1008.9 bits: 193.8 E(32554): 7.1e-50
Smith-Waterman score: 829; 65.2% identity (85.0% similar) in 207 aa overlap (11-214:1-198)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGG-FGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCA
: ::: :: . : : ::.:::::: ::::.:.::::.:: .
CCDS30 MSAGGDFG---------NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNT
10 20 30 40
60 70 80 90 100 110
pF1KE3 CQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSF
:::.:::::::::::::. :.::::::::::::.:::::::::::.:::::::::.:::
CCDS30 YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSF
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 KETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGY
..:.::.. ::.:::.::.:::.::: :: .:::.: :.::.....:.::::::::::::
CCDS30 QQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGY
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 NVKKLFRRVASALLSTRT-SPPPKEGTVEIELESFEESGNRSYC
:::.::::::::: . .. . ::: ..:.:.. .:
CCDS30 NVKQLFRRVASALPGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC
170 180 190 200
>>CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 (208 aa)
initn: 800 init1: 759 opt: 820 Z-score: 998.1 bits: 191.7 E(32554): 2.8e-49
Smith-Waterman score: 820; 68.1% identity (88.8% similar) in 188 aa overlap (29-214:11-198)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGGFGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCAC
: : ::.:::::: ::::.:.::::.:: .
CCDS82 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY
10 20 30 40
60 70 80 90 100 110
pF1KE3 QATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFK
:::.:::::::::::::. :.::::::::::::.:::::::::::.:::::::::.:::.
CCDS82 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQ
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 ETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYN
.: ::.. ::.:::.::.:::.::: :: .::::. :.::.:...:::::::::::.:::
CCDS82 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 VKKLFRRVASALLSTRTSPP-PKEGTVEIELESFEESGNRSYC
::.::::::.:: . ... .: ..:.::. .:
CCDS82 VKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC
170 180 190 200
>>CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 (208 aa)
initn: 789 init1: 748 opt: 809 Z-score: 984.8 bits: 189.3 E(32554): 1.6e-48
Smith-Waterman score: 809; 67.0% identity (88.3% similar) in 188 aa overlap (29-214:11-198)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGGFGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCAC
: : ::.:::::: ::::.:.::::.:: .
CCDS82 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY
10 20 30 40
60 70 80 90 100 110
pF1KE3 QATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFK
:::.:::::::::::::. ..::::::::::::.::::::::::. :::::::::.:::.
CCDS82 QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 ETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYN
.: ::.. ::.:::.::.:::.::: :: .::::. :.::.:...:::::::::::.:::
CCDS82 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 VKKLFRRVASALLSTRTSPP-PKEGTVEIELESFEESGNRSYC
::.::::::.:: . ... .: ..:.::. .:
CCDS82 VKQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC
170 180 190 200
>>CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2 (254 aa)
initn: 717 init1: 676 opt: 733 Z-score: 892.1 bits: 172.4 E(32554): 2.3e-43
Smith-Waterman score: 733; 58.9% identity (79.7% similar) in 207 aa overlap (11-214:1-198)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGG-FGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCA
: ::: :: . : : ::.:::::: .:::.:.:: :.:: .
CCDS46 MSAGGDFG---------NPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNT
10 20 30 40
60 70 80 90 100 110
pF1KE3 CQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSF
:: .::::::::::::: . :.:::::::::..:::: :::::. :::::::::.:::
CCDS46 YQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSF
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 KETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGY
..: ::.. ::.:::.::.: :.::. :: .::::..:.::.:...::: :::: ::.::
CCDS46 QQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGY
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 NVKKLFRRVASALLSTRTSPP-PKEGTVEIELESFEESGNRSYC
:::.::::::.:: . ... .: .:.::. .:
CCDS46 NVKQLFRRVAAALPGMESTQDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKP
170 180 190 200 210 220
CCDS46 PYSFIDCSVNIGLNLFPSLITFCNSSLLPVSWR
230 240 250
>>CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 (254 aa)
initn: 709 init1: 668 opt: 725 Z-score: 882.4 bits: 170.6 E(32554): 7.8e-43
Smith-Waterman score: 725; 58.9% identity (78.7% similar) in 207 aa overlap (11-214:1-198)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGG-FGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCA
: ::: :: . : : ::.:::::: .:::.:.:: :.:: .
CCDS82 MSAGGDFG---------NPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNT
10 20 30 40
60 70 80 90 100 110
pF1KE3 CQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSF
:: .::::::::::::: . :.:::::::::..:::: :::::. :::::::::.:::
CCDS82 YQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSF
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 KETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGY
..: ::.. ::.: :.::.: :.::: :: .::::. :.::.:...::: :::: ::.::
CCDS82 QQTTKWIDDVRTEGGSDVIITLVGNKTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGY
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 NVKKLFRRVASALLSTRTSPP-PKEGTVEIELESFEESGNRSYC
:::.::::::.:: . ... .: .:.::. .:
CCDS82 NVKQLFRRVAAALPGMESTQDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKP
170 180 190 200 210 220
CCDS82 PYSFIDCSVNIGLNLFPSLITFCNSSLLPVSWR
230 240 250
>>CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11 (175 aa)
initn: 700 init1: 700 opt: 718 Z-score: 876.2 bits: 169.0 E(32554): 1.7e-42
Smith-Waterman score: 718; 66.1% identity (88.5% similar) in 165 aa overlap (51-214:1-165)
30 40 50 60 70 80
pF1KE3 AERTEYQSLCKSKLLFLGEQSGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQ
::.:: . :::.:::::::::::::. ..
CCDS58 MYDSFDNTYQATIGIDFLSKTMYLEDRTIR
10 20 30
90 100 110 120 130 140
pF1KE3 LQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIML
::::::::::::.::::::::::. :::::::::.:::..: ::.. ::.:::.::.:::
CCDS58 LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIML
40 50 60 70 80 90
150 160 170 180 190
pF1KE3 LGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTRTSPP-
.::: :: .::::. :.::.:...:::::::::::.:::::.::::::.:: . ...
CCDS58 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDR
100 110 120 130 140 150
200 210 220
pF1KE3 PKEGTVEIELESFEESGNRSYC
.: ..:.::. .:
CCDS58 SREDMIDIKLEKPQEQPVSEGGCSC
160 170
>>CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 (215 aa)
initn: 470 init1: 427 opt: 465 Z-score: 570.2 bits: 112.6 E(32554): 1.9e-25
Smith-Waterman score: 465; 41.3% identity (75.6% similar) in 172 aa overlap (29-199:18-189)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGGFGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCAC
.:. ::..:::.. ::.:.. ::. ..:
CCDS26 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQ
10 20 30 40
60 70 80 90 100 110
pF1KE3 QATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFK
..:.: ::..:. :.: :....::::::::.::: : : : . :.::::::: .::
CCDS26 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 ETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYN
.. .::.... . . ..:: : ::: :: ::: : .... . . ...:.::::::..:
CCDS26 RAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN
110 120 130 140 150 160
180 190 200 210 220
pF1KE3 VKKLFRRVASALLSTRTSPPPKEGTVEIELESFEESGNRSYC
:...: .:. : ... . :
CCDS26 VNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCSN
170 180 190 200 210
>>CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 (216 aa)
initn: 444 init1: 425 opt: 465 Z-score: 570.2 bits: 112.6 E(32554): 1.9e-25
Smith-Waterman score: 465; 37.4% identity (72.7% similar) in 198 aa overlap (29-221:19-213)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGGFGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCAC
.:. ::..:::.. ::.:.. ::. ..:
CCDS11 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQ
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 QATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFK
..:.: ::..:. :.: :....::::::::.::: : : : . :.::::::: ..:
CCDS11 ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 ETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYN
.. .::.... . . ..:: : ::: :: .:: : .... . . ...:.::::::..:
CCDS11 RAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMN
120 130 140 150 160 170
180 190 200 210 220
pF1KE3 VKKLFRRVASALLSTR----TSPPPKEGTVEIELESFEESGNRSYC
:...: .:. : ... :. : .. :... .. ..:: :
CCDS11 VNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENN---PASRSQCCSN
180 190 200 210
>>CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 (249 aa)
initn: 444 init1: 425 opt: 465 Z-score: 569.3 bits: 112.7 E(32554): 2.2e-25
Smith-Waterman score: 465; 37.4% identity (72.7% similar) in 198 aa overlap (29-221:52-246)
10 20 30 40 50
pF1KE3 MSAFGHDEAWMEAGGFGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGC
.:. ::..:::.. ::.:.. ::. ..:
CCDS58 PHALWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHE
30 40 50 60 70 80
60 70 80 90 100 110
pF1KE3 ACQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINS
..:.: ::..:. :.: :....::::::::.::: : : : . :.::::::: ..
CCDS58 YQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDT
90 100 110 120 130 140
120 130 140 150 160 170
pF1KE3 FKETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTG
: .. .::.... . . ..:: : ::: :: .:: : .... . . ...:.::::::.
CCDS58 FARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTA
150 160 170 180 190 200
180 190 200 210 220
pF1KE3 YNVKKLFRRVASALLSTR----TSPPPKEGTVEIELESFEESGNRSYC
.::...: .:. : ... :. : .. :... .. ..:: :
CCDS58 MNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENN---PASRSQCCSN
210 220 230 240
221 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:32:45 2016 done: Sat Nov 5 22:32:45 2016
Total Scan time: 1.520 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]