FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3514, 245 aa
  1>>>pF1KE3514 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4780+/-0.000886; mu= 11.1763+/- 0.053
 mean_var=184.3786+/-40.149, 0's: 0 Z-trim(112.6): 105  B-trim: 4 in 1/50
 Lambda= 0.094454
 statistics sampled from 13220 (13336) to 13220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.41), width:  16
 Scan time:  2.230

The best scores are:                                      opt bits E(32554)
CCDS58405.1 RNF151 gene_id:146310|Hs108|chr16      ( 245) 1751 250.2 9.3e-67


>>CCDS58405.1 RNF151 gene_id:146310|Hs108|chr16           (245 aa)
 initn: 1751 init1: 1751 opt: 1751  Z-score: 1312.0  bits: 250.2 E(32554): 9.3e-67
Smith-Waterman score: 1751; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE3 MGGGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGGGYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQKTCPCCRKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VKRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 VKRKKVVHMNKLRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 QVPRGTLAEHRQHCQQGSQQRCPLGCGATLDPAERARHNCYRELHNAWSVRQERRRPLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QVPRGTLAEHRQHCQQGSQQRCPLGCGATLDPAERARHNCYRELHNAWSVRQERRRPLLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SLLRRVRWLDQATSVVRRELAELSNFLEEDTALLEGAPQEEAEAAPEGNVGAEVVGEPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SLLRRVRWLDQATSVVRRELAELSNFLEEDTALLEGAPQEEAEAAPEGNVGAEVVGEPRA
              190       200       210       220       230       240

            
pF1KE3 NIPCK
       :::::
CCDS58 NIPCK
            




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:33:59 2016 done: Sat Nov  5 22:33:59 2016
 Total Scan time:  2.230 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]