Result of FASTA (omim) for
pFN21AE3511
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3511, 397 aa
1>>>pF1KE3511 397 - 397 aa - 397 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4472+/-0.000327; mu= 13.4434+/- 0.021
mean_var=129.4945+/-25.771, 0's: 0 Z-trim(118.9): 19 B-trim: 50 in 1/53
Lambda= 0.112706
statistics sampled from 32383 (32402) to 32383 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.38), width: 16
Scan time: 9.480
The best scores are: opt bits E(85289)
NP_079441 (OMIM: 609885) RNA polymerase II elongat ( 397) 2685 447.6 2.4e-125
XP_016864732 (OMIM: 601874) PREDICTED: RNA polymer ( 455) 437 82.1 2.9e-15
XP_016864729 (OMIM: 601874) PREDICTED: RNA polymer ( 508) 437 82.2 3.1e-15
XP_016864730 (OMIM: 601874) PREDICTED: RNA polymer ( 508) 437 82.2 3.1e-15
XP_016864731 (OMIM: 601874) PREDICTED: RNA polymer ( 508) 437 82.2 3.1e-15
XP_006714638 (OMIM: 601874) PREDICTED: RNA polymer ( 585) 437 82.2 3.5e-15
NP_036213 (OMIM: 601874) RNA polymerase II elongat ( 640) 437 82.3 3.7e-15
XP_016882826 (OMIM: 600284) PREDICTED: RNA polymer ( 337) 394 75.0 2.9e-13
XP_016882825 (OMIM: 600284) PREDICTED: RNA polymer ( 370) 394 75.1 3.2e-13
XP_016882824 (OMIM: 600284) PREDICTED: RNA polymer ( 488) 394 75.2 3.9e-13
NP_006523 (OMIM: 600284) RNA polymerase II elongat ( 621) 394 75.3 4.6e-13
XP_016864728 (OMIM: 601874) PREDICTED: RNA polymer ( 589) 263 54.0 1.1e-06
XP_005248504 (OMIM: 610153,610572) PREDICTED: MARV ( 546) 238 49.9 1.8e-05
NP_001231663 (OMIM: 610153,610572) MARVEL domain-c ( 546) 238 49.9 1.8e-05
XP_005248502 (OMIM: 610153,610572) PREDICTED: MARV ( 558) 238 49.9 1.8e-05
XP_005248503 (OMIM: 610153,610572) PREDICTED: MARV ( 558) 238 49.9 1.8e-05
NP_001033692 (OMIM: 610153,610572) MARVEL domain-c ( 558) 238 49.9 1.8e-05
XP_011526632 (OMIM: 600284) PREDICTED: RNA polymer ( 357) 192 42.2 0.0024
>>NP_079441 (OMIM: 609885) RNA polymerase II elongation (397 aa)
initn: 2685 init1: 2685 opt: 2685 Z-score: 2371.3 bits: 447.6 E(85289): 2.4e-125
Smith-Waterman score: 2685; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397)
10 20 30 40 50 60
pF1KE3 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR
310 320 330 340 350 360
370 380 390
pF1KE3 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
:::::::::::::::::::::::::::::::::::::
NP_079 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
370 380 390
>>XP_016864732 (OMIM: 601874) PREDICTED: RNA polymerase (455 aa)
initn: 449 init1: 404 opt: 437 Z-score: 395.1 bits: 82.1 E(85289): 2.9e-15
Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:200-449)
130 140 150 160 170 180
pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS
.:.: . .. : : ..: :.:: .:
XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS
170 180 190 200 210 220
190 200 210 220 230
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL
. . .: . .: ...:: .. : .....:. . . :. .
XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ
230 240 250 260 270 280
240 250 260 270 280 290
pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ
. . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::..
XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK
290 300 310 320 330 340
300 310 320 330 340 350
pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED
: :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ...
XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE
350 360 370 380 390 400
360 370 380 390
pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
...:::.:.... :.:.::: ::::::.::.::: :: ::...
XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
410 420 430 440 450
>>XP_016864729 (OMIM: 601874) PREDICTED: RNA polymerase (508 aa)
initn: 449 init1: 404 opt: 437 Z-score: 394.5 bits: 82.2 E(85289): 3.1e-15
Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:253-502)
130 140 150 160 170 180
pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS
.:.: . .. : : ..: :.:: .:
XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS
230 240 250 260 270 280
190 200 210 220 230
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL
. . .: . .: ...:: .. : .....:. . . :. .
XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ
290 300 310 320 330 340
240 250 260 270 280 290
pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ
. . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::..
XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK
350 360 370 380 390
300 310 320 330 340 350
pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED
: :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ...
XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE
400 410 420 430 440 450
360 370 380 390
pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
...:::.:.... :.:.::: ::::::.::.::: :: ::...
XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
460 470 480 490 500
>>XP_016864730 (OMIM: 601874) PREDICTED: RNA polymerase (508 aa)
initn: 449 init1: 404 opt: 437 Z-score: 394.5 bits: 82.2 E(85289): 3.1e-15
Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:253-502)
130 140 150 160 170 180
pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS
.:.: . .. : : ..: :.:: .:
XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS
230 240 250 260 270 280
190 200 210 220 230
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL
. . .: . .: ...:: .. : .....:. . . :. .
XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ
290 300 310 320 330 340
240 250 260 270 280 290
pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ
. . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::..
XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK
350 360 370 380 390
300 310 320 330 340 350
pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED
: :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ...
XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE
400 410 420 430 440 450
360 370 380 390
pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
...:::.:.... :.:.::: ::::::.::.::: :: ::...
XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
460 470 480 490 500
>>XP_016864731 (OMIM: 601874) PREDICTED: RNA polymerase (508 aa)
initn: 449 init1: 404 opt: 437 Z-score: 394.5 bits: 82.2 E(85289): 3.1e-15
Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:253-502)
130 140 150 160 170 180
pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS
.:.: . .. : : ..: :.:: .:
XP_016 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS
230 240 250 260 270 280
190 200 210 220 230
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL
. . .: . .: ...:: .. : .....:. . . :. .
XP_016 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ
290 300 310 320 330 340
240 250 260 270 280 290
pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ
. . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::..
XP_016 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK
350 360 370 380 390
300 310 320 330 340 350
pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED
: :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ...
XP_016 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE
400 410 420 430 440 450
360 370 380 390
pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
...:::.:.... :.:.::: ::::::.::.::: :: ::...
XP_016 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
460 470 480 490 500
>>XP_006714638 (OMIM: 601874) PREDICTED: RNA polymerase (585 aa)
initn: 551 init1: 404 opt: 437 Z-score: 393.7 bits: 82.2 E(85289): 3.5e-15
Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:330-579)
130 140 150 160 170 180
pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS
.:.: . .. : : ..: :.:: .:
XP_006 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS
300 310 320 330 340 350
190 200 210 220 230
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL
. . .: . .: ...:: .. : .....:. . . :. .
XP_006 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ
360 370 380 390 400 410
240 250 260 270 280 290
pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ
. . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::..
XP_006 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK
420 430 440 450 460 470
300 310 320 330 340 350
pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED
: :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ...
XP_006 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE
480 490 500 510 520 530
360 370 380 390
pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
...:::.:.... :.:.::: ::::::.::.::: :: ::...
XP_006 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
540 550 560 570 580
>>NP_036213 (OMIM: 601874) RNA polymerase II elongation (640 aa)
initn: 599 init1: 404 opt: 437 Z-score: 393.1 bits: 82.3 E(85289): 3.7e-15
Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:385-634)
130 140 150 160 170 180
pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS
.:.: . .. : : ..: :.:: .:
NP_036 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS
360 370 380 390 400 410
190 200 210 220 230
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL
. . .: . .: ...:: .. : .....:. . . :. .
NP_036 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ
420 430 440 450 460 470
240 250 260 270 280 290
pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ
. . . . . . .: :: ..:.: .. .::. :.:: : :: ..::::..
NP_036 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK
480 490 500 510 520 530
300 310 320 330 340 350
pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED
: :: : ::.. :..::...: ::: ::::. :...:::.: :. ::. :. ::. ...
NP_036 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE
540 550 560 570 580 590
360 370 380 390
pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
...:::.:.... :.:.::: ::::::.::.::: :: ::...
NP_036 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
600 610 620 630 640
>>XP_016882826 (OMIM: 600284) PREDICTED: RNA polymerase (337 aa)
initn: 412 init1: 383 opt: 394 Z-score: 359.0 bits: 75.0 E(85289): 2.9e-13
Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:150-331)
170 180 190 200 210 220
pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP
.: :. : .. :.. :.:. ::.:..
XP_016 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA-
120 130 140 150 160 170
230 240 250 260 270 280
pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS
:.: :: .: : : . : :. . :: .: :
XP_016 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS
180 190 200 210
290 300 310 320 330 340
pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR
. :::::.: :: :.::...:..::...:.::: ::::. ..:: .: :..... .
XP_016 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ
220 230 240 250 260 270
350 360 370 380 390
pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
:. ::.. . .:.:::.:..: .: .::.::::::.::.::: :: :....
XP_016 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP
280 290 300 310 320 330
>>XP_016882825 (OMIM: 600284) PREDICTED: RNA polymerase (370 aa)
initn: 441 init1: 383 opt: 394 Z-score: 358.5 bits: 75.1 E(85289): 3.2e-13
Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:183-364)
170 180 190 200 210 220
pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP
.: :. : .. :.. :.:. ::.:..
XP_016 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA-
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS
:.: :: .: : : . : :. . :: .: :
XP_016 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS
220 230 240 250
290 300 310 320 330 340
pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR
. :::::.: :: :.::...:..::...:.::: ::::. ..:: .: :..... .
XP_016 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ
260 270 280 290 300 310
350 360 370 380 390
pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
:. ::.. . .:.:::.:..: .: .::.::::::.::.::: :: :....
XP_016 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP
320 330 340 350 360 370
>>XP_016882824 (OMIM: 600284) PREDICTED: RNA polymerase (488 aa)
initn: 441 init1: 383 opt: 394 Z-score: 356.9 bits: 75.2 E(85289): 3.9e-13
Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:301-482)
170 180 190 200 210 220
pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP
.: :. : .. :.. :.:. ::.:..
XP_016 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA-
280 290 300 310 320
230 240 250 260 270 280
pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS
:.: :: .: : : . : :. . :: .: :
XP_016 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS
330 340 350 360
290 300 310 320 330 340
pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR
. :::::.: :: :.::...:..::...:.::: ::::. ..:: .: :..... .
XP_016 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ
370 380 390 400 410 420
350 360 370 380 390
pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
:. ::.. . .:.:::.:..: .: .::.::::::.::.::: :: :....
XP_016 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP
430 440 450 460 470 480
397 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:22:25 2016 done: Tue Nov 8 10:22:27 2016
Total Scan time: 9.480 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]