FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3510, 403 aa
  1>>>pF1KE3510 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3003+/-0.000784; mu= 17.2467+/- 0.047
 mean_var=70.0724+/-13.726, 0's: 0 Z-trim(108.2): 31  B-trim: 2 in 1/51
 Lambda= 0.153215
 statistics sampled from 10057 (10086) to 10057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.31), width:  16
 Scan time:  3.100

The best scores are:                                      opt bits E(32554)
CCDS13002.1 TBC1D20 gene_id:128637|Hs108|chr20     ( 403) 2683 602.0 3.1e-172


>>CCDS13002.1 TBC1D20 gene_id:128637|Hs108|chr20          (403 aa)
 initn: 2683 init1: 2683 opt: 2683  Z-score: 3205.7  bits: 602.0 E(32554): 3.1e-172
Smith-Waterman score: 2683; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE3 MALRSAQGDGPTSGHWDGGAEKADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MALRSAQGDGPTSGHWDGGAEKADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LTDEIRRKVWPKLLNVNANDPPPISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FFLACHPLMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 QFPPSELAREAAAQQQAERTAASTFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QFPPSELAREAAAQQQAERTAASTFKDFELASAQQRPDMVLRQRFRGLLRPEDRTKDVLT
              310       320       330       340       350       360

              370       380       390       400   
pF1KE3 KPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS13 KPRTNRFVKLAVMGLTVALGAAALAVVKSALEWAPKFQLQLFP
              370       380       390       400   




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:34:34 2016 done: Sat Nov  5 22:34:35 2016
 Total Scan time:  3.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]