Result of FASTA (ccds) for
pFN21AE3509
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3509, 580 aa
1>>>pF1KE3509 580 - 580 aa - 580 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3326+/-0.00078; mu= 19.2272+/- 0.047
mean_var=73.7681+/-14.979, 0's: 0 Z-trim(108.9): 46 B-trim: 215 in 1/53
Lambda= 0.149328
statistics sampled from 10473 (10514) to 10473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.323), width: 16
Scan time: 3.230
The best scores are: opt bits E(32554)
CCDS5698.1 FBXO24 gene_id:26261|Hs108|chr7 ( 580) 4008 872.8 0
CCDS5699.2 FBXO24 gene_id:26261|Hs108|chr7 ( 618) 3930 856.0 0
CCDS55138.1 FBXO24 gene_id:26261|Hs108|chr7 ( 568) 3923 854.5 0
>>CCDS5698.1 FBXO24 gene_id:26261|Hs108|chr7 (580 aa)
initn: 4008 init1: 4008 opt: 4008 Z-score: 4663.4 bits: 872.8 E(32554): 0
Smith-Waterman score: 4008; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:1-580)
10 20 30 40 50 60
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
490 500 510 520 530 540
550 560 570 580
pF1KE3 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::
CCDS56 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
550 560 570 580
>>CCDS5699.2 FBXO24 gene_id:26261|Hs108|chr7 (618 aa)
initn: 3930 init1: 3930 opt: 3930 Z-score: 4572.2 bits: 856.0 E(32554): 0
Smith-Waterman score: 3930; 100.0% identity (100.0% similar) in 568 aa overlap (13-580:51-618)
10 20 30 40
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLF
::::::::::::::::::::::::::::::
CCDS56 SREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCGSELGVEEKRGKGNPISIQLF
30 40 50 60 70 80
50 60 70 80 90 100
pF1KE3 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE3 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
150 160 170 180 190 200
170 180 190 200 210 220
pF1KE3 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
210 220 230 240 250 260
230 240 250 260 270 280
pF1KE3 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
270 280 290 300 310 320
290 300 310 320 330 340
pF1KE3 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
330 340 350 360 370 380
350 360 370 380 390 400
pF1KE3 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
390 400 410 420 430 440
410 420 430 440 450 460
pF1KE3 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL
450 460 470 480 490 500
470 480 490 500 510 520
pF1KE3 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
510 520 530 540 550 560
530 540 550 560 570 580
pF1KE3 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
570 580 590 600 610
>>CCDS55138.1 FBXO24 gene_id:26261|Hs108|chr7 (568 aa)
initn: 3923 init1: 3923 opt: 3923 Z-score: 4564.6 bits: 854.5 E(32554): 0
Smith-Waterman score: 3923; 100.0% identity (100.0% similar) in 567 aa overlap (14-580:2-568)
10 20 30 40 50 60
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
10 20 30 40
70 80 90 100 110 120
pF1KE3 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE3 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE3 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE3 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
470 480 490 500 510 520
550 560 570 580
pF1KE3 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::
CCDS55 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
530 540 550 560
580 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:13:23 2016 done: Sat Nov 5 02:13:24 2016
Total Scan time: 3.230 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]