Result of FASTA (omim) for
pFN21AE3432
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3432, 808 aa
1>>>pF1KE3432 808 - 808 aa - 808 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0982+/-0.000411; mu= -0.2937+/- 0.026
mean_var=262.4669+/-53.635, 0's: 0 Z-trim(120.4): 24 B-trim: 1658 in 1/57
Lambda= 0.079166
statistics sampled from 35497 (35521) to 35497 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.416), width: 16
Scan time: 11.420
The best scores are: opt bits E(85289)
NP_006161 (OMIM: 164031) probable 28S rRNA (cytosi ( 808) 5328 622.2 2.7e-177
NP_001028886 (OMIM: 164031) probable 28S rRNA (cyt ( 808) 5328 622.2 2.7e-177
NP_001245237 (OMIM: 164031) probable 28S rRNA (cyt ( 812) 5310 620.2 1.1e-176
XP_005253748 (OMIM: 164031) PREDICTED: probable 28 ( 812) 5310 620.2 1.1e-176
NP_001245238 (OMIM: 164031) probable 28S rRNA (cyt ( 845) 4319 507.0 1.4e-142
NP_001245239 (OMIM: 164031) probable 28S rRNA (cyt ( 628) 3920 461.4 5.7e-129
NP_683759 (OMIM: 615732) probable 28S rRNA (cytosi ( 466) 380 57.0 2.3e-07
NP_001161819 (OMIM: 615732) probable 28S rRNA (cyt ( 470) 378 56.7 2.7e-07
NP_001161820 (OMIM: 615732) probable 28S rRNA (cyt ( 391) 371 55.9 4e-07
NP_060514 (OMIM: 615732) probable 28S rRNA (cytosi ( 429) 371 55.9 4.4e-07
NP_001243057 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 262 43.4 0.002
NP_001243056 (OMIM: 615394) 5-methylcytosine rRNA ( 335) 262 43.4 0.002
NP_950245 (OMIM: 615394) 5-methylcytosine rRNA met ( 384) 262 43.4 0.0022
>>NP_006161 (OMIM: 164031) probable 28S rRNA (cytosine(4 (808 aa)
initn: 5328 init1: 5328 opt: 5328 Z-score: 3304.0 bits: 622.2 E(85289): 2.7e-177
Smith-Waterman score: 5328; 99.9% identity (99.9% similar) in 808 aa overlap (1-808:1-808)
10 20 30 40 50 60
pF1KE3 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 APKTNKSPEAKPLPGKLPKGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDSEEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 APKTNKSPEAKPLPGKLPKGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDSEEDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MVNHGDLWGSEDDADMVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQWSEEE
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
NP_006 MVNHGDLWGSEDDADTVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQWSEEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 EVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 LRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 DFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 TNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 PSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPPKGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPPKGTD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 TQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGPQPPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGPQPPT
730 740 750 760 770 780
790 800
pF1KE3 VSPIRSSRPPPAKRKKSQSRGNSQLLLS
::::::::::::::::::::::::::::
NP_006 VSPIRSSRPPPAKRKKSQSRGNSQLLLS
790 800
>>NP_001028886 (OMIM: 164031) probable 28S rRNA (cytosin (808 aa)
initn: 5328 init1: 5328 opt: 5328 Z-score: 3304.0 bits: 622.2 E(85289): 2.7e-177
Smith-Waterman score: 5328; 99.9% identity (99.9% similar) in 808 aa overlap (1-808:1-808)
10 20 30 40 50 60
pF1KE3 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 APKTNKSPEAKPLPGKLPKGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDSEEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKTNKSPEAKPLPGKLPKGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDSEEDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MVNHGDLWGSEDDADMVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQWSEEE
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVNHGDLWGSEDDADTVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQWSEEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 EVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 LRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 DFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 TNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 PSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPPKGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPPKGTD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 TQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGPQPPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGPQPPT
730 740 750 760 770 780
790 800
pF1KE3 VSPIRSSRPPPAKRKKSQSRGNSQLLLS
::::::::::::::::::::::::::::
NP_001 VSPIRSSRPPPAKRKKSQSRGNSQLLLS
790 800
>>NP_001245237 (OMIM: 164031) probable 28S rRNA (cytosin (812 aa)
initn: 4840 init1: 4840 opt: 5310 Z-score: 3292.9 bits: 620.2 E(85289): 1.1e-176
Smith-Waterman score: 5310; 99.4% identity (99.4% similar) in 812 aa overlap (1-808:1-812)
10 20 30 40 50 60
pF1KE3 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 APKTNKSPEAKPLPGKLPKG----AVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDS
:::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
NP_001 APKTNKSPEAKPLPGKLPKGISAGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 EEDGMVNHGDLWGSEDDADMVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQW
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 EEDGMVNHGDLWGSEDDADTVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 SEEETEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEEETEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVH
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 KRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEF
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 LEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPE
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 YLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAE
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 RLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKD
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE3 EKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE3 PTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSE
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE3 TATPTNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TATPTNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSE
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE3 LSTVPSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSTVPSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPP
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE3 KGTDTQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGTDTQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGP
730 740 750 760 770 780
780 790 800
pF1KE3 QPPTVSPIRSSRPPPAKRKKSQSRGNSQLLLS
::::::::::::::::::::::::::::::::
NP_001 QPPTVSPIRSSRPPPAKRKKSQSRGNSQLLLS
790 800 810
>>XP_005253748 (OMIM: 164031) PREDICTED: probable 28S rR (812 aa)
initn: 4840 init1: 4840 opt: 5310 Z-score: 3292.9 bits: 620.2 E(85289): 1.1e-176
Smith-Waterman score: 5310; 99.4% identity (99.4% similar) in 812 aa overlap (1-808:1-812)
10 20 30 40 50 60
pF1KE3 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 APKTNKSPEAKPLPGKLPKG----AVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDS
:::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
XP_005 APKTNKSPEAKPLPGKLPKGISAGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 EEDGMVNHGDLWGSEDDADMVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQW
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_005 EEDGMVNHGDLWGSEDDADTVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 SEEETEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEEETEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVH
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 KRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEF
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 LEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPE
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE3 YLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAE
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE3 RLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKD
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE3 EKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE3 PTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSE
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE3 TATPTNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TATPTNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSE
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE3 LSTVPSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSTVPSVTKTQASSSFQDSSQPAGKAEGIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPP
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE3 KGTDTQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGTDTQTPAVLSPSKTQATLKPKDHHQPLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGP
730 740 750 760 770 780
780 790 800
pF1KE3 QPPTVSPIRSSRPPPAKRKKSQSRGNSQLLLS
::::::::::::::::::::::::::::::::
XP_005 QPPTVSPIRSSRPPPAKRKKSQSRGNSQLLLS
790 800 810
>>NP_001245238 (OMIM: 164031) probable 28S rRNA (cytosin (845 aa)
initn: 4826 init1: 4309 opt: 4319 Z-score: 2680.9 bits: 507.0 E(85289): 1.4e-142
Smith-Waterman score: 5201; 95.5% identity (95.5% similar) in 840 aa overlap (6-808:6-845)
10 20 30 40 50 60
pF1KE3 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
10 20 30 40 50 60
70 80 90 100 110
pF1KE3 APKTNKSPEAKPLPGKLPKG----AVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDS
:::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
NP_001 APKTNKSPEAKPLPGKLPKGISAGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDS
70 80 90 100 110 120
120 130 140 150
pF1KE3 EEDGMVNHGDLWGSEDDADMVDDYGADSNSEDEEEGEA----------------------
::::::::::::::::::: ::::::::::::::::::
NP_001 EEDGMVNHGDLWGSEDDADTVDDYGADSNSEDEEEGEAAGVQWLGLGSLQPPPPGFKQFS
130 140 150 160 170 180
160 170 180 190 200
pF1KE3 -----------LLPIERAARKQKAREAAAGIQWSEEETEDEEEEKEVTPESGPPKVEEAD
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLSFPSSWDLQLLPIERAARKQKAREAAAGIQWSEEETEDEEEEKEVTPESGPPKVEEAD
190 200 210 220 230 240
210 220 230 240 250 260
pF1KE3 GGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYL
250 260 270 280 290 300
270 280 290 300 310 320
pF1KE3 NRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQA
310 320 330 340 350 360
330 340 350 360 370 380
pF1KE3 LINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHER
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE3 ILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQF
430 440 450 460 470 480
450 460 470 480 490 500
pF1KE3 PKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSK
490 500 510 520 530 540
510 520 530 540 550 560
pF1KE3 TGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTR
550 560 570 580 590 600
570 580 590 600 610 620
pF1KE3 RFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQPAKKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQPAKKAK
610 620 630 640 650 660
630 640 650 660 670 680
pF1KE3 GAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVPSVTKTQASSSFQDSSQPAGKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVPSVTKTQASSSFQDSSQPAGKAE
670 680 690 700 710 720
690 700 710 720 730 740
pF1KE3 GIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPPKGTDTQTPAVLSPSKTQATLKPKDHHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIREPKVTGKLKQRSPKLQSSKKVAFLRQNAPPKGTDTQTPAVLSPSKTQATLKPKDHHQ
730 740 750 760 770 780
750 760 770 780 790 800
pF1KE3 PLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGPQPPTVSPIRSSRPPPAKRKKSQSRGNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLGRAKGVEKQQLPEQPFEKAAFQKQNDTPKGPQPPTVSPIRSSRPPPAKRKKSQSRGNS
790 800 810 820 830 840
pF1KE3 QLLLS
:::::
NP_001 QLLLS
>>NP_001245239 (OMIM: 164031) probable 28S rRNA (cytosin (628 aa)
initn: 3920 init1: 3920 opt: 3920 Z-score: 2436.5 bits: 461.4 E(85289): 5.7e-129
Smith-Waterman score: 3920; 99.8% identity (99.8% similar) in 592 aa overlap (1-592:1-592)
10 20 30 40 50 60
pF1KE3 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAVSDENSKRLSSRARKRAAKRRLGSVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 APKTNKSPEAKPLPGKLPKGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDSEEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKTNKSPEAKPLPGKLPKGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEEEEEEDSEEDG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MVNHGDLWGSEDDADMVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQWSEEE
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVNHGDLWGSEDDADTVDDYGADSNSEDEEEGEALLPIERAARKQKAREAAAGIQWSEEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 TEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEDEEEEKEVTPESGPPKVEEADGGLQINVDEEPFVLPPAGEMEQDAQAPDLQRVHKRIQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 EVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKDPAVKTNKDEKDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 LRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 DFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATP
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTDGVLLCRS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 TNVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTV
NP_001 GWTAVVQSQLIATSTFQVQAILVPQTPK
610 620
>>NP_683759 (OMIM: 615732) probable 28S rRNA (cytosine-C (466 aa)
initn: 276 init1: 232 opt: 380 Z-score: 253.3 bits: 57.0 E(85289): 2.3e-07
Smith-Waterman score: 395; 31.6% identity (55.4% similar) in 354 aa overlap (299-625:131-460)
270 280 290 300 310 320
pF1KE3 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
:...:: : :.::::: :... . .:
NP_683 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
110 120 130 140 150
330 340 350 360 370
pF1KE3 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_683 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_683 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
220 230 240 250 260 270
440 450 460 470 480
pF1KE3 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
... : : : . : .::: :::.:. :. .:.. : . . .
NP_683 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
280 290 300 310 320 330
490 500 510 520 530 540
pF1KE3 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_683 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
340 350 360 370 380
550 560 570 580 590 600
pF1KE3 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
. ..:.. : :. . : :.: .:::.: ... .:.: . ......:
NP_683 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVE--VPSSAS-QAKASAPE
390 400 410 420 430 440
610 620 630 640 650 660
pF1KE3 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
. :. :: .. .: . : ::
NP_683 RT--PSPAPKRKKRQQ--RAAAGACTPPCT
450 460
>>NP_001161819 (OMIM: 615732) probable 28S rRNA (cytosin (470 aa)
initn: 276 init1: 232 opt: 378 Z-score: 252.0 bits: 56.7 E(85289): 2.7e-07
Smith-Waterman score: 380; 33.0% identity (54.9% similar) in 324 aa overlap (299-595:131-434)
270 280 290 300 310 320
pF1KE3 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
:...:: : :.::::: :... . .:
NP_001 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
110 120 130 140 150
330 340 350 360 370
pF1KE3 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_001 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_001 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
220 230 240 250 260 270
440 450 460 470 480
pF1KE3 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
... : : : . : .::: :::.:. :. .:.. : . . .
NP_001 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
280 290 300 310 320 330
490 500 510 520 530 540
pF1KE3 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_001 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
340 350 360 370 380
550 560 570 580 590 600
pF1KE3 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
. ..:.. : :. . : :.: .:::.: ... .: : ::.:
NP_001 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERV--EVP-SLTGQSISTRTH
390 400 410 420 430 440
610 620 630 640 650 660
pF1KE3 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
NP_001 TQPSPKEKEETAKSRSRCLHTALHIAEAPG
450 460 470
>>NP_001161820 (OMIM: 615732) probable 28S rRNA (cytosin (391 aa)
initn: 276 init1: 232 opt: 371 Z-score: 248.8 bits: 55.9 E(85289): 4e-07
Smith-Waterman score: 373; 32.8% identity (55.0% similar) in 311 aa overlap (299-582:93-386)
270 280 290 300 310 320
pF1KE3 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
:...:: : :.::::: :... . .:
NP_001 EKKLRPHLAKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
70 80 90 100 110 120
330 340 350 360 370
pF1KE3 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_001 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
130 140 150 160 170 180
380 390 400 410 420 430
pF1KE3 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_001 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
190 200 210 220 230 240
440 450 460 470 480
pF1KE3 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
... : : : . : .::: :::.:. :. .:.. : . . .
NP_001 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
250 260 270 280 290
490 500 510 520 530 540
pF1KE3 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_001 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
300 310 320 330 340 350
550 560 570 580 590 600
pF1KE3 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
. ..:.. : :. . : :.: .:::.: ...
NP_001 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVEVPR
360 370 380 390
610 620 630 640 650 660
pF1KE3 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
>>NP_060514 (OMIM: 615732) probable 28S rRNA (cytosine-C (429 aa)
initn: 276 init1: 232 opt: 371 Z-score: 248.2 bits: 55.9 E(85289): 4.4e-07
Smith-Waterman score: 373; 32.8% identity (55.0% similar) in 311 aa overlap (299-582:131-424)
270 280 290 300 310 320
pF1KE3 DLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRG
:...:: : :.::::: :... . .:
NP_060 RLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV--RVNTLKTCSDDVVDYFKRQG
110 120 130 140 150
330 340 350 360 370
pF1KE3 VN-------LDPL----GKWSKTG-----LVVYDSSVPIGATPEYLAGHYMLQGASSMLP
. :: : :: :.:. ... . : : ::: .:: .: ::
NP_060 FSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLP
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 VMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANAERLKSVVGNLHRLGVTN
.: : : ...: : :::.:::..: :.:: : :.: : .:.:: :.. : : ::.
NP_060 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC
220 230 240 250 260 270
440 450 460 470 480
pF1KE3 TIISHYDGRQFPKVVGGFDR------VLLDAPCSGTGVISK---DPAVKTNKDEKDILRC
... : : : . : .::: :::.:. :. .:.. : . . .
NP_060 CELAEED---FLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVR-LHAL
280 290 300 310 320 330
490 500 510 520 530 540
pF1KE3 AHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKR--NVRLVPTGLD
: .:.. : :. : . ::: :::. :::: :: ::.. ::.:.
NP_060 AGFQQRALCHAL-----TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPA
340 350 360 370 380
550 560 570 580 590 600
pF1KE3 FGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSETATPT
. ..:.. : :. . : :.: .:::.: ...
NP_060 WPHRGLSTF------PGAEHCLRASPETTLSSGFFVAVIERVEVPR
390 400 410 420
610 620 630 640 650 660
pF1KE3 NVDLPQVIPKSENSSQPAKKAKGAAKTKQQLQKQQHPKKASFQKLNGISKGADSELSTVP
808 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:37:01 2016 done: Sun Nov 6 01:37:03 2016
Total Scan time: 11.420 Total Display time: 0.200
Function used was FASTA [36.3.4 Apr, 2011]