Result of FASTA (omim) for
pFN21AE3410
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3410, 310 aa
1>>>pF1KE3410 310 - 310 aa - 310 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1432+/-0.000331; mu= 8.6535+/- 0.021
mean_var=131.2194+/-27.251, 0's: 0 Z-trim(118.8): 11 B-trim: 1674 in 1/55
Lambda= 0.111963
statistics sampled from 32123 (32134) to 32123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.377), width: 16
Scan time: 8.490
The best scores are: opt bits E(85289)
NP_612639 (OMIM: 609514) transcription initiation ( 310) 1995 333.0 4.6e-91
XP_016865730 (OMIM: 609514) PREDICTED: transcripti ( 319) 1974 329.6 4.9e-90
XP_011512598 (OMIM: 609514) PREDICTED: transcripti ( 338) 1690 283.8 3.3e-76
XP_016865732 (OMIM: 609514) PREDICTED: transcripti ( 247) 1615 271.6 1.2e-72
XP_016865731 (OMIM: 609514) PREDICTED: transcripti ( 256) 1594 268.2 1.2e-71
XP_005248906 (OMIM: 609514) PREDICTED: transcripti ( 163) 1062 182.1 6.4e-46
XP_016865734 (OMIM: 609514) PREDICTED: transcripti ( 213) 1062 182.2 7.9e-46
XP_016865733 (OMIM: 609514) PREDICTED: transcripti ( 222) 1062 182.2 8.2e-46
>>NP_612639 (OMIM: 609514) transcription initiation fact (310 aa)
initn: 1995 init1: 1995 opt: 1995 Z-score: 1755.9 bits: 333.0 E(85289): 4.6e-91
Smith-Waterman score: 1995; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)
10 20 30 40 50 60
pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
250 260 270 280 290 300
310
pF1KE3 PKIRRKKSLS
::::::::::
NP_612 PKIRRKKSLS
310
>>XP_016865730 (OMIM: 609514) PREDICTED: transcription i (319 aa)
initn: 1974 init1: 1974 opt: 1974 Z-score: 1737.4 bits: 329.6 E(85289): 4.9e-90
Smith-Waterman score: 1974; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
250 260 270 280 290 300
310
pF1KE3 PKIRRKKSLS
::::::
XP_016 PKIRRKNRHGILLCCPGWS
310
>>XP_011512598 (OMIM: 609514) PREDICTED: transcription i (338 aa)
initn: 1677 init1: 1677 opt: 1690 Z-score: 1489.1 bits: 283.8 E(85289): 3.3e-76
Smith-Waterman score: 1690; 86.1% identity (91.5% similar) in 316 aa overlap (1-310:1-313)
10 20 30 40 50 60
pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 DSSEQDEQTDTENLALHISMEDS------GAEKENTSVLQQNPSLSGSRNGEENIIDNPY
:::::::::::::::::::: .: :.. .. . :: : . .: . .....
XP_011 DSSEQDEQTDTENLALHISMIESRSVTQAGVQWQDLGSLQPPPP-GFKRFSSLSLLSSWN
250 260 270 280 290
300 310
pF1KE3 LRPVKKPKIRRKKSLS
: . .: ::. ::
XP_011 YRRILEP--RRRTPLSCSRTPPCRVAGMGRRTSSITLICGR
300 310 320 330
>>XP_016865732 (OMIM: 609514) PREDICTED: transcription i (247 aa)
initn: 1615 init1: 1615 opt: 1615 Z-score: 1425.6 bits: 271.6 E(85289): 1.2e-72
Smith-Waterman score: 1615; 100.0% identity (100.0% similar) in 247 aa overlap (64-310:1-247)
40 50 60 70 80 90
pF1KE3 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI
::::::::::::::::::::::::::::::
XP_016 MLQSYISEIGRSAKSYCEHTARTQPTLSDI
10 20 30
100 110 120 130 140 150
pF1KE3 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE3 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE3 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL
160 170 180 190 200 210
280 290 300 310
pF1KE3 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKKSLS
:::::::::::::::::::::::::::::::::::::
XP_016 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKKSLS
220 230 240
>>XP_016865731 (OMIM: 609514) PREDICTED: transcription i (256 aa)
initn: 1594 init1: 1594 opt: 1594 Z-score: 1407.0 bits: 268.2 E(85289): 1.2e-71
Smith-Waterman score: 1594; 100.0% identity (100.0% similar) in 243 aa overlap (64-306:1-243)
40 50 60 70 80 90
pF1KE3 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI
::::::::::::::::::::::::::::::
XP_016 MLQSYISEIGRSAKSYCEHTARTQPTLSDI
10 20 30
100 110 120 130 140 150
pF1KE3 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNRPHPPHIPSHFPEF
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE3 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KE3 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVL
160 170 180 190 200 210
280 290 300 310
pF1KE3 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKKSLS
:::::::::::::::::::::::::::::::::
XP_016 QQNPSLSGSRNGEENIIDNPYLRPVKKPKIRRKNRHGILLCCPGWS
220 230 240 250
>>XP_005248906 (OMIM: 609514) PREDICTED: transcription i (163 aa)
initn: 1062 init1: 1062 opt: 1062 Z-score: 945.4 bits: 182.1 E(85289): 6.4e-46
Smith-Waterman score: 1062; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)
10 20 30 40 50 60
pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
:::::::::::::::::::::::::::::::::::::::::::
XP_005 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP
130 140 150 160
190 200 210 220 230 240
pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
>>XP_016865734 (OMIM: 609514) PREDICTED: transcription i (213 aa)
initn: 1369 init1: 1062 opt: 1062 Z-score: 943.7 bits: 182.2 E(85289): 7.9e-46
Smith-Waterman score: 1179; 68.7% identity (68.7% similar) in 310 aa overlap (1-310:1-213)
10 20 30 40 50 60
pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
:::::::::::::::::::::::::::::::::::::::::::
XP_016 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP-----------------
130 140 150 160
190 200 210 220 230 240
pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
XP_016 ------------------------------------------------------------
250 260 270 280 290 300
pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
::::::::::::::::::::::::::::::::::::::::
XP_016 --------------------EDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
170 180 190 200
310
pF1KE3 PKIRRKKSLS
::::::::::
XP_016 PKIRRKKSLS
210
>>XP_016865733 (OMIM: 609514) PREDICTED: transcription i (222 aa)
initn: 1348 init1: 1062 opt: 1062 Z-score: 943.5 bits: 182.2 E(85289): 8.2e-46
Smith-Waterman score: 1158; 68.3% identity (68.3% similar) in 306 aa overlap (1-306:1-209)
10 20 30 40 50 60
pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
:::::::::::::::::::::::::::::::::::::::::::
XP_016 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTP-----------------
130 140 150 160
190 200 210 220 230 240
pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
XP_016 ------------------------------------------------------------
250 260 270 280 290 300
pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
::::::::::::::::::::::::::::::::::::::::
XP_016 --------------------EDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
170 180 190 200
310
pF1KE3 PKIRRKKSLS
::::::
XP_016 PKIRRKNRHGILLCCPGWS
210 220
310 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:08:28 2016 done: Sun Nov 6 05:08:29 2016
Total Scan time: 8.490 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]