FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3409, 305 aa
  1>>>pF1KE3409 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7262+/-0.00116; mu= -12.1722+/- 0.065
 mean_var=445.1134+/-106.085, 0's: 0 Z-trim(110.0): 235  B-trim: 0 in 0/53
 Lambda= 0.060791
 statistics sampled from 11072 (11300) to 11072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.347), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS42822.1 STK16 gene_id:8576|Hs108|chr2          ( 305) 2106 199.3 3.2e-51
CCDS82573.1 STK16 gene_id:8576|Hs108|chr2          ( 273) 1291 127.7 9.7e-30


>>CCDS42822.1 STK16 gene_id:8576|Hs108|chr2               (305 aa)
 initn: 2106 init1: 2106 opt: 2106  Z-score: 1033.1  bits: 199.3 E(32554): 3.2e-51
Smith-Waterman score: 2106; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KE3 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 RQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ
              250       260       270       280       290       300

            
pF1KE3 HTTQI
       :::::
CCDS42 HTTQI
            

>>CCDS82573.1 STK16 gene_id:8576|Hs108|chr2               (273 aa)
 initn: 1859 init1: 1291 opt: 1291  Z-score: 647.4  bits: 127.7 E(32554): 9.7e-30
Smith-Waterman score: 1799; 89.5% identity (89.5% similar) in 305 aa overlap (1-305:1-273)

               10        20        30        40        50        60
pF1KE3 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 RQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQ
       :::::::                                :::::::::::::::::::::
CCDS82 RQALTLQ--------------------------------SLGCVLYAMMFGEGPYDMVFQ
                                              190       200        

              250       260       270       280       290       300
pF1KE3 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KGDSVALAVQNQLSIPQSPRHSSALRQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ
      210       220       230       240       250       260        

            
pF1KE3 HTTQI
       :::::
CCDS82 HTTQI
      270   




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:09:03 2016 done: Sun Nov  6 05:09:03 2016
 Total Scan time:  2.080 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]