Result of FASTA (omim) for
pFN21AE3401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3401, 149 aa
1>>>pF1KE3401 149 - 149 aa - 149 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5494+/-0.000276; mu= 16.0870+/- 0.017
mean_var=61.0193+/-12.469, 0's: 0 Z-trim(120.0): 136 B-trim: 611 in 1/52
Lambda= 0.164188
statistics sampled from 34604 (34772) to 34604 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.408), width: 16
Scan time: 5.130
The best scores are: opt bits E(85289)
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 1054 257.0 8e-69
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 999 244.0 6.6e-65
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 987 241.2 4.8e-64
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 983 240.2 9.2e-64
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 974 238.1 4.5e-63
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 919 225.0 3.4e-59
NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 837 205.5 2e-53
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 837 205.5 2e-53
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 827 203.2 1e-52
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 712 175.9 1.6e-44
NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 692 171.2 4.1e-43
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 651 161.7 5.6e-40
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 651 161.7 5.6e-40
NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 651 161.7 5.6e-40
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 651 161.7 5.6e-40
NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 651 161.7 5.6e-40
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 646 160.5 1.2e-39
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 646 160.5 1.2e-39
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 646 160.5 1.2e-39
NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 643 159.7 1.7e-39
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 576 143.9 1.1e-34
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 545 136.5 1.9e-32
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 534 133.9 1e-31
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 444 112.5 2.6e-25
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 435 110.4 1.1e-24
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 429 109.0 3e-24
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 422 107.4 1.1e-23
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 387 99.0 3e-21
NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 383 98.2 7.3e-21
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 380 97.5 1.1e-20
NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 379 97.2 1.2e-20
NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 376 96.3 1.5e-20
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 360 92.8 3.3e-19
NP_001243285 (OMIM: 603721) ubiquitin-conjugating ( 122) 354 91.1 5.7e-19
NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 338 87.4 9.5e-18
NP_004214 (OMIM: 603890) ubiquitin/ISG15-conjugati ( 153) 337 87.2 1.1e-17
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 337 87.3 1.2e-17
NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17
NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17
NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 333 86.3 2.2e-17
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 333 86.3 2.2e-17
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 326 84.6 6.2e-17
NP_003960 (OMIM: 603173) NEDD8-conjugating enzyme ( 183) 308 80.4 1.5e-15
>>NP_871622 (OMIM: 602963) ubiquitin-conjugating enzyme (149 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1356.6 bits: 257.0 E(85289): 8e-69
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
70 80 90 100 110 120
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>NP_003331 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_003 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871616 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871619 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871615 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871617 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871620 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1286.2 bits: 244.0 E(85289): 6.6e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme (148 aa)
initn: 987 init1: 987 opt: 987 Z-score: 1270.8 bits: 241.2 E(85289): 4.8e-64
Smith-Waterman score: 987; 95.8% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
::::::::::::::::::..::::.::::
NP_871 LVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme (147 aa)
initn: 983 init1: 983 opt: 983 Z-score: 1265.7 bits: 240.2 E(85289): 9.2e-64
Smith-Waterman score: 983; 95.8% identity (98.6% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: . :::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::.:::::.:::::::::
NP_003 LVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
149 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:12:15 2016 done: Sun Nov 6 05:12:16 2016
Total Scan time: 5.130 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]