FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3310, 819 aa
  1>>>pF1KE3310 819 - 819 aa - 819 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.8129+/-0.00148; mu= -18.4988+/- 0.089
 mean_var=457.5818+/-95.522, 0's: 0 Z-trim(111.1): 47  B-trim: 382 in 1/50
 Lambda= 0.059957
 statistics sampled from 12120 (12152) to 12120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.373), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(32554)
CCDS2146.1 IWS1 gene_id:55677|Hs108|chr2           ( 819) 5385 481.0 3.5e-135


>>CCDS2146.1 IWS1 gene_id:55677|Hs108|chr2                (819 aa)
 initn: 5385 init1: 5385 opt: 5385  Z-score: 2540.4  bits: 481.0 E(32554): 3.5e-135
Smith-Waterman score: 5385; 100.0% identity (100.0% similar) in 819 aa overlap (1-819:1-819)

               10        20        30        40        50        60
pF1KE3 MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVERHSENETSDREDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MDSEYYSGDQSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVERHSENETSDREDGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PKGHHVTDSENDEPLNLNASDSESEELHRQKDSDSESEERAEPPASDSENEDVNQHGSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 PKGHHVTDSENDEPLNLNASDSESEELHRQKDSDSESEERAEPPASDSENEDVNQHGSDS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ESEETRKLPGSDSENEELLNGHASDSENEDVGKHPASDSEIEELQKSPASDSETEDALKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 ESEETRKLPGSDSENEELLNGHASDSENEDVGKHPASDSEIEELQKSPASDSETEDALKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QISDSESEEPPRHQASDSENEEPPKPRMSDSESEELPKPQVSDSESEEPPRHQASDSENE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 QISDSESEEPPRHQASDSENEEPPKPRMSDSESEELPKPQVSDSESEEPPRHQASDSENE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 ELPKPRISDSESEDPPRHQASDSENEELPKPRISDSESEDPPRNQASDSENEELPKPRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 ELPKPRISDSESEDPPRHQASDSENEELPKPRISDSESEDPPRNQASDSENEELPKPRVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 DSESEGPQKGPASDSETEDASRHKQKPESDDDSDRENKGEDTEMQNDSFHSDSHMDRKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DSESEGPQKGPASDSETEDASRHKQKPESDDDSDRENKGEDTEMQNDSFHSDSHMDRKKF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 HSSDSEEEEHKKQKMDSDEDEKEGEEEKVAKRKAAVLSDSEDEEKASAKKSRVVSDADDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 HSSDSEEEEHKKQKMDSDEDEKEGEEEKVAKRKAAVLSDSEDEEKASAKKSRVVSDADDS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 DSDAVSDKSGKREKTIASDSEEEAGKELSDKKNEEKDLFGSDSESGNEEENLIADIFGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 DSDAVSDKSGKREKTIASDSEEEAGKELSDKKNEEKDLFGSDSESGNEEENLIADIFGES
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 GDEEEEEFTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 GDEEEEEFTGFNQEDLEEEKGETQVKEAEDSDSDDNIKRGKHMDFLSDFEMMLQRKKSMS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 GKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 GKRRRNRDGGTFISDADDVVSAMIVKMNEAAEEDRQLNNQKKPALKKLTLLPAVVMHLKK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 QDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELPSVSQETLKHSGIGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 QDLKETFIDSGVMSAIKEWLSPLPDRSLPALKIREELLKILQELPSVSQETLKHSGIGRA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 VMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRMNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 VMYLYKHPKESRSNKDMAGKLINEWSRPIFGLTSNYKGMTREEREQRDLEQMPQRRRMNS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 TGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPSNKDYVVRPKWNVEMESSRFQAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 TGGQTPRRDLEKVLTGEEKALRPGDPGFCARARVPMPSNKDYVVRPKWNVEMESSRFQAT
              730       740       750       760       770       780

              790       800       810         
pF1KE3 SKKGISRLDKQMRKFTDIRKKSRSAHAVKISIEGNKMPL
       :::::::::::::::::::::::::::::::::::::::
CCDS21 SKKGISRLDKQMRKFTDIRKKSRSAHAVKISIEGNKMPL
              790       800       810         




819 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:23:35 2016 done: Mon Nov  7 19:23:36 2016
 Total Scan time:  4.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]