Result of FASTA (ccds) for
pFN21AE3289
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3289, 745 aa
1>>>pF1KE3289 745 - 745 aa - 745 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1886+/-0.00098; mu= 15.9769+/- 0.059
mean_var=84.0662+/-17.196, 0's: 0 Z-trim(105.5): 17 B-trim: 16 in 1/49
Lambda= 0.139883
statistics sampled from 8447 (8452) to 8447 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.26), width: 16
Scan time: 3.920
The best scores are: opt bits E(32554)
CCDS5208.1 FBXO30 gene_id:84085|Hs108|chr6 ( 745) 5095 1038.6 0
CCDS33835.1 FBXO40 gene_id:51725|Hs108|chr3 ( 709) 601 131.7 4e-30
>>CCDS5208.1 FBXO30 gene_id:84085|Hs108|chr6 (745 aa)
initn: 5095 init1: 5095 opt: 5095 Z-score: 5555.4 bits: 1038.6 E(32554): 0
Smith-Waterman score: 5095; 100.0% identity (100.0% similar) in 745 aa overlap (1-745:1-745)
10 20 30 40 50 60
pF1KE3 MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DMALALQDQRMLLESLKVATMMSKATDKVSKPREQISVKSSVPEIPHANGLVSVDEESYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DMALALQDQRMLLESLKVATMMSKATDKVSKPREQISVKSSVPEIPHANGLVSVDEESYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 ALYQATVETTRSLAAALDILNTATRDIGMLNTSVPNDMDEQQNARESLEDQNLKDQDHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 ALYQATVETTRSLAAALDILNTATRDIGMLNTSVPNDMDEQQNARESLEDQNLKDQDHLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EEEIGAVGGIDYNDTNQNAQSEQNGSSDLLCDLNTSSYDTSALCNGFPLENICTQVIDQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 EEEIGAVGGIDYNDTNQNAQSEQNGSSDLLCDLNTSSYDTSALCNGFPLENICTQVIDQN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 QNLHGDSKQSNLTNGDCVASSDGTSKPSSSLAVAAQLREIIPSSALPNGTVQHILMPDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 QNLHGDSKQSNLTNGDCVASSDGTSKPSSSLAVAAQLREIIPSSALPNGTVQHILMPDDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 GEGELCWKKVDLGDVKNVDVLSFSHAPSFNFLSNSCWSKPKEDKAVDTSDLEVAEDPMGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GEGELCWKKVDLGDVKNVDVLSFSHAPSFNFLSNSCWSKPKEDKAVDTSDLEVAEDPMGL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 QGIDLITAALLFCLGDSPGGRGISDSRMADIYHIDVGTQTFSLPSAILATSTMVGEIASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 QGIDLITAALLFCLGDSPGGRGISDSRMADIYHIDVGTQTFSLPSAILATSTMVGEIASA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 SACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVH
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 GDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFGVQPCVSTVLVEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFGVQPCVSTVLVEP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 ARNCVLGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 ARNCVLGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 WGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKKCSYNVVEKREEAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 WGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKKCSYNVVEKREEAIP
670 680 690 700 710 720
730 740
pF1KE3 LPCMCVTRELTKEGRSLRSVLKPVL
:::::::::::::::::::::::::
CCDS52 LPCMCVTRELTKEGRSLRSVLKPVL
730 740
>>CCDS33835.1 FBXO40 gene_id:51725|Hs108|chr3 (709 aa)
initn: 1544 init1: 578 opt: 601 Z-score: 654.3 bits: 131.7 E(32554): 4e-30
Smith-Waterman score: 1464; 35.6% identity (65.8% similar) in 748 aa overlap (6-742:11-700)
10 20 30 40 50
pF1KE3 MEEELQHSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPF
.: :: .: .:.: ::. :: .:.: :.:::.:: :: ::.::::.
CCDS33 MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 ERVPCLNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVD
:.::::::..:::..:.:.:.:.::..::::::::.::::::: .. .::. ...
CCDS33 EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 EVAQLDMALALQDQRMLLESLKVATMMSKATDKVSKPREQISVKSSVPEIPHANGLVSVD
:: :::::::..:..:::.. .. . : .... . .. ..:: :. : : :..
CCDS33 SEECLDTALALQDQKVLFRSLKMVELFPE-TREATEEEPTMNGETSVEEMGGAVGGVDI-
130 140 150 160 170
180 190 200 210 220 230
pF1KE3 EESYGALYQATVETTRSLAAALDILNTATRDIGMLNTSVPNDMDEQQNARESLEDQNLKD
: . .. :. .: :. :.. ...:... .. .
CCDS33 ----GLVPHGLSATNGEMAE----LSQEEREV-------------LAKTKEGMDLVKFGQ
180 190 200 210
240 250 260 270 280 290
pF1KE3 QDHLYEEEIGAVGGIDYNDTNQNAQSEQNGSSDLLCDLNTSSYDTSALCNGFPLENICTQ
.... .: :.... ::..:. :.....: . .:... . .: : . .
CCDS33 WENIFSKE-HAASAL----TNSSASCESKNKNDSEKEQISSGHNM-VEGEGAPKK----K
220 230 240 250 260
300 310 320 330 340 350
pF1KE3 VIDQNQNLHGDSKQSNLTNGDCVASSDGTSKPSSSLAVAAQLREIIPSSALPNGT--VQH
..::. . : . . :.: . .::. . .. :: :. .. . :: ..
CCDS33 EPQENQKQQ-DVRTAMETTG-LAPWQDGVLERLKT-AVDAKDYNMY---LVHNGRMLIHF
270 280 290 300 310 320
360 370 380 390 400
pF1KE3 ILMPD-DEGEGELCWKKVDLGDVKNVDVLSF--SHAPSFNFLSNSCWS-KPKEDKAVDTS
:: : .. . :.. .::.: ... :. . :... : ::.: ::::::
CCDS33 GQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKRARLGDAMLSCKPSEHKAVDTS
330 340 350 360 370 380
410 420 430 440 450 460
pF1KE3 DLEVA-EDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMADIYHIDVGTQTFSLPSAIL
:: .. :: : ::: ..: : :. ::.:: : .: .:::... .
CCDS33 DLGITVED---LPKSDLIKTTLQCALERELKGHVISESRSIDGLFMDFATQTYNFEPEQF
390 400 410 420 430
470 480 490 500 510 520
pF1KE3 ATSTMVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFR
...:.......:. :. : ..: :::.: . :. : :::.:...::
CCDS33 SSGTVLADLTAAT-----------PG---GLHVELHSECVTRRHNKSSSAFTFTCNKFFR
440 450 460 470 480
530 540 550 560 570 580
pF1KE3 RKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFG
: :: :::::: ::.. ::::...:::::: :::. : .: : : ::.:....:..:.
CCDS33 RDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFA
490 500 510 520 530 540
590 600 610 620 630 640
pF1KE3 VQPCVSTVLVEPARNCVL----GLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMR
..: :. : : .: : : .. :.:::.:.:..::::::. :: ::: :: :::
CCDS33 IKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMR
550 560 570 580 590 600
650 660 670 680 690 700
pF1KE3 DVCGSLLQSRGMVILQWGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHL
..:..::: ::::.::: :..: .:..::......:.::. : ... :.: .. ::..::
CCDS33 NICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSMSEHL
610 620 630 640 650 660
710 720 730 740
pF1KE3 KKCSYNVVEKREEAIPLPCMCVTRELTKEGRSLRSVLKPVL
:.: .:.::.. . : : :: :: ..: :: :...
CCDS33 KSCPFNIVEHKTDPILLTSMCQPREQARE--SLVSTFRIRPRGRYVS
670 680 690 700
745 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:37:18 2016 done: Mon Nov 7 03:37:19 2016
Total Scan time: 3.920 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]