Result of FASTA (omim) for
pFN21AE3287
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3287, 740 aa
1>>>pF1KE3287 740 - 740 aa - 740 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0274+/-0.00046; mu= 18.2601+/- 0.029
mean_var=131.1043+/-26.572, 0's: 0 Z-trim(113.7): 151 B-trim: 960 in 2/50
Lambda= 0.112012
statistics sampled from 22945 (23117) to 22945 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.271), width: 16
Scan time: 9.470
The best scores are: opt bits E(85289)
NP_612144 (OMIM: 613143) E3 ubiquitin-protein liga ( 740) 4918 807.1 0
NP_001273175 (OMIM: 613142) probable E3 ubiquitin- ( 347) 751 133.4 1.5e-30
NP_848597 (OMIM: 613142) probable E3 ubiquitin-pro ( 347) 751 133.4 1.5e-30
XP_011536324 (OMIM: 613142) PREDICTED: probable E3 ( 347) 751 133.4 1.5e-30
XP_005268760 (OMIM: 613142) PREDICTED: probable E3 ( 347) 751 133.4 1.5e-30
XP_005268755 (OMIM: 613142) PREDICTED: probable E3 ( 350) 751 133.4 1.5e-30
XP_005268754 (OMIM: 613142) PREDICTED: probable E3 ( 350) 751 133.4 1.5e-30
XP_005268757 (OMIM: 613142) PREDICTED: probable E3 ( 350) 751 133.4 1.5e-30
NP_001273174 (OMIM: 613142) probable E3 ubiquitin- ( 350) 751 133.4 1.5e-30
XP_016867215 (OMIM: 613141) PREDICTED: probable E3 ( 575) 521 96.5 3.3e-19
NP_001096066 (OMIM: 613141) probable E3 ubiquitin- ( 575) 521 96.5 3.3e-19
XP_016867216 (OMIM: 613141) PREDICTED: probable E3 ( 575) 521 96.5 3.3e-19
XP_016867212 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
NP_001096065 (OMIM: 613141) probable E3 ubiquitin- ( 622) 521 96.5 3.5e-19
XP_011514074 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
XP_011514076 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
NP_001096064 (OMIM: 613141) probable E3 ubiquitin- ( 622) 521 96.5 3.5e-19
XP_016867213 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
XP_005250188 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
NP_065943 (OMIM: 613141) probable E3 ubiquitin-pro ( 622) 521 96.5 3.5e-19
XP_005250189 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
XP_016867214 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
XP_011514077 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
XP_011514075 (OMIM: 613141) PREDICTED: probable E3 ( 622) 521 96.5 3.5e-19
XP_006718546 (OMIM: 616110) PREDICTED: E3 ubiquiti ( 513) 508 94.3 1.3e-18
NP_001287656 (OMIM: 616110) E3 ubiquitin-protein l ( 513) 508 94.3 1.3e-18
NP_055992 (OMIM: 616110) E3 ubiquitin-protein liga ( 619) 508 94.4 1.5e-18
XP_011536311 (OMIM: 602582) PREDICTED: E3 ubiquiti ( 620) 498 92.8 4.6e-18
NP_004407 (OMIM: 602582) E3 ubiquitin-protein liga ( 620) 498 92.8 4.6e-18
XP_016867217 (OMIM: 613141) PREDICTED: probable E3 ( 568) 333 66.1 4.6e-10
>>NP_612144 (OMIM: 613143) E3 ubiquitin-protein ligase D (740 aa)
initn: 4918 init1: 4918 opt: 4918 Z-score: 4304.6 bits: 807.1 E(85289): 0
Smith-Waterman score: 4918; 100.0% identity (100.0% similar) in 740 aa overlap (1-740:1-740)
10 20 30 40 50 60
pF1KE3 MASHLRPPSPLLVRVYKSGPRVRRKLESYFQSSKSSGGGECTVSTQEHEAPGTFRVEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MASHLRPPSPLLVRVYKSGPRVRRKLESYFQSSKSSGGGECTVSTQEHEAPGTFRVEFSE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RAAKERVLKKGEHQILVDEKPVPIFLVPTENSIKKNTRPQISSLTQSQAETPSGDMHQHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RAAKERVLKKGEHQILVDEKPVPIFLVPTENSIKKNTRPQISSLTQSQAETPSGDMHQHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GHIPNAVDSCLQKIFLTVTADLNCNLFSKEQRAYITTLCPSIRKMEGHDGIEKVCGDFQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 GHIPNAVDSCLQKIFLTVTADLNCNLFSKEQRAYITTLCPSIRKMEGHDGIEKVCGDFQD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 IERIHQFLSEQFLESEQKQQFSPSMTERKPLSQQERDSCISPSEPETKAEQKSNYFEVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 IERIHQFLSEQFLESEQKQQFSPSMTERKPLSQQERDSCISPSEPETKAEQKSNYFEVPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 PYFEYFKYICPDKINSIEKRFGVNIEIQESSPNMVCLDFTSSRSGDLEAARESFASEFQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 PYFEYFKYICPDKINSIEKRFGVNIEIQESSPNMVCLDFTSSRSGDLEAARESFASEFQK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 NTEPLKQECVSLADSKQANKFKQELNHQFTKLLIKEKGGELTLLGTQDDISAAKQKISEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 NTEPLKQECVSLADSKQANKFKQELNHQFTKLLIKEKGGELTLLGTQDDISAAKQKISEA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 FVKIPVKLFAANYMMNVIEVDSAHYKLLETELLQEISEIEKRYDICSKVSEKGQKTCILF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 FVKIPVKLFAANYMMNVIEVDSAHYKLLETELLQEISEIEKRYDICSKVSEKGQKTCILF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 ESKDRQVDLSVHAYASFIDAFQHASCQLMREVLLLKSLGKERKHLHQTKFADDFRKRHPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 ESKDRQVDLSVHAYASFIDAFQHASCQLMREVLLLKSLGKERKHLHQTKFADDFRKRHPN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 VHFVLNQESMTLTGLPNHLAKAKQYVLKGGGMSSLAGKKLKEGHETPMDIDSDDSKAASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 VHFVLNQESMTLTGLPNHLAKAKQYVLKGGGMSSLAGKKLKEGHETPMDIDSDDSKAASP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 PLKGSVSSEASELDKKEKGICVICMDTISNKKVLPKCKHEFCAPCINKAMSYKPICPTCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 PLKGSVSSEASELDKKEKGICVICMDTISNKKVLPKCKHEFCAPCINKAMSYKPICPTCQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 TSYGIQKGNQPEGSMVFTVSRDSLPGYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 TSYGIQKGNQPEGSMVFTVSRDSLPGYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 TAYLPDNKEGRKVLKLLYRAFDQKLIFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 TAYLPDNKEGRKVLKLLYRAFDQKLIFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYG
670 680 690 700 710 720
730 740
pF1KE3 YPDPSYLKRVKEELKAKGIE
::::::::::::::::::::
NP_612 YPDPSYLKRVKEELKAKGIE
730 740
>>NP_001273175 (OMIM: 613142) probable E3 ubiquitin-prot (347 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:143-344)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
NP_001 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
NP_001 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
NP_001 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
NP_001 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340
>>NP_848597 (OMIM: 613142) probable E3 ubiquitin-protein (347 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:143-344)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
NP_848 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
NP_848 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
NP_848 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
NP_848 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340
>>XP_011536324 (OMIM: 613142) PREDICTED: probable E3 ubi (347 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:143-344)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
XP_011 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
XP_011 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
XP_011 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
XP_011 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340
>>XP_005268760 (OMIM: 613142) PREDICTED: probable E3 ubi (347 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:143-344)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
XP_005 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
XP_005 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
XP_005 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
XP_005 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340
>>XP_005268755 (OMIM: 613142) PREDICTED: probable E3 ubi (350 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:146-347)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
XP_005 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
XP_005 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
XP_005 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
XP_005 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340 350
>>XP_005268754 (OMIM: 613142) PREDICTED: probable E3 ubi (350 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:146-347)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
XP_005 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
XP_005 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
XP_005 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
XP_005 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340 350
>>XP_005268757 (OMIM: 613142) PREDICTED: probable E3 ubi (350 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:146-347)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
XP_005 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
XP_005 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
XP_005 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
XP_005 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340 350
>>NP_001273174 (OMIM: 613142) probable E3 ubiquitin-prot (350 aa)
initn: 742 init1: 532 opt: 751 Z-score: 669.3 bits: 133.4 E(85289): 1.5e-30
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (540-739:146-347)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
::: . . : ..... : ::. :.
NP_001 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
120 130 140 150 160 170
570 580 590 600 610 620
pF1KE3 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
: :.: ::.: :: ::..:.. : :: : :: ::::. : :. ::.:. ::
NP_001 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
180 190 200 210 220 230
630 640 650 660 670 680
pF1KE3 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
.::..::::: : . :.: :::::: :::: :.::::: :: ::: :. .::::.:
NP_001 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
240 250 260 270 280 290
690 700 710 720 730 740
pF1KE3 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE
::.: : . : .:::::::::::: :::...:::::.:: ::.:::.::::
NP_001 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
300 310 320 330 340 350
>>XP_016867215 (OMIM: 613141) PREDICTED: probable E3 ubi (575 aa)
initn: 560 init1: 274 opt: 521 Z-score: 465.8 bits: 96.5 E(85289): 3.3e-19
Smith-Waterman score: 528; 41.2% identity (60.6% similar) in 226 aa overlap (540-739:344-567)
510 520 530 540 550 560
pF1KE3 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
: . ... . :: :.:::. .:
XP_016 PGSVPATVPMQMPKPSRVQQALAGATPKPEPEPEQVIKNYTEELKVPPDEDCIICMEKLS
320 330 340 350 360 370
570 580 590 600
pF1KE3 ----------NKKV-------LPKCKHEFCAPCI-------NKAMSYKPICPTCQTSYGI
.: . : ::.: : :. :: : . ::.:.: ::
XP_016 TASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMYCNGNKDGSLQ--CPSCKTIYGE
380 390 400 410 420 430
610 620 630 640 650 660
pF1KE3 QKGNQPEGSMVFTVSRDSLPGYESFGTIVITYSMKAGIQTEEHPNPGKRYP--GIQRTAY
. :.::.:.: . ::::.:. :::.:.::. ::: ::::::: . :. : :
XP_016 KTGTQPQGKMEVLRFQMSLPGHEDCGTILIVYSIPHGIQGPEHPNPGKPFTARGFPRQCY
440 450 460 470 480 490
670 680 690 700 710 720
pF1KE3 LPDNKEGRKVLKLLYRAFDQKLIFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPD
:::: .:::::.:: :. ..:::::: : . : .:...::.::::: . .::::
XP_016 LPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGETDTVVWNEIHHKTEMDRNITGHGYPD
500 510 520 530 540 550
730 740
pF1KE3 PSYLKRVKEELKAKGIE
:.::. : :: :.:.
XP_016 PNYLQNVLAELAAQGVTEDCLEQQ
560 570
740 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:42:33 2016 done: Sun Nov 6 17:42:34 2016
Total Scan time: 9.470 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]