Result of FASTA (omim) for
pFN21AE3278
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3278, 696 aa
1>>>pF1KE3278 696 - 696 aa - 696 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1788+/-0.000498; mu= 14.9309+/- 0.031
mean_var=79.5242+/-15.892, 0's: 0 Z-trim(108.5): 38 B-trim: 0 in 0/55
Lambda= 0.143822
statistics sampled from 16597 (16612) to 16597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.539), E-opt: 0.2 (0.195), width: 16
Scan time: 10.710
The best scores are: opt bits E(85289)
NP_004727 (OMIM: 605237,616413) xenotropic and pol ( 696) 4670 979.6 0
NP_001315591 (OMIM: 605237,616413) xenotropic and ( 503) 3345 704.6 2.3e-202
NP_001129141 (OMIM: 605237,616413) xenotropic and ( 631) 2907 613.7 6.6e-175
>>NP_004727 (OMIM: 605237,616413) xenotropic and polytro (696 aa)
initn: 4670 init1: 4670 opt: 4670 Z-score: 5237.5 bits: 979.6 E(85289): 0
Smith-Waterman score: 4670; 100.0% identity (100.0% similar) in 696 aa overlap (1-696:1-696)
10 20 30 40 50 60
pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
610 620 630 640 650 660
670 680 690
pF1KE3 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
::::::::::::::::::::::::::::::::::::
NP_004 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
670 680 690
>>NP_001315591 (OMIM: 605237,616413) xenotropic and poly (503 aa)
initn: 3345 init1: 3345 opt: 3345 Z-score: 3753.9 bits: 704.6 E(85289): 2.3e-202
Smith-Waterman score: 3345; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)
10 20 30 40 50 60
pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
::::::::::::::::::::
NP_001 GKYSTTFFMVTFAALYSTHKGIL
490 500
>>NP_001129141 (OMIM: 605237,616413) xenotropic and poly (631 aa)
initn: 2907 init1: 2907 opt: 2907 Z-score: 3261.2 bits: 613.7 E(85289): 6.6e-175
Smith-Waterman score: 4079; 90.7% identity (90.7% similar) in 696 aa overlap (1-696:1-631)
10 20 30 40 50 60
pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
::::::::::::::::
NP_001 LKWDESKGLLPNNSEE--------------------------------------------
430
490 500 510 520 530 540
pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
:::::::::::::::::::::::::::::::::::::::
NP_001 ---------------------RGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
440 450 460 470
550 560 570 580 590 600
pF1KE3 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
480 490 500 510 520 530
610 620 630 640 650 660
pF1KE3 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
540 550 560 570 580 590
670 680 690
pF1KE3 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
::::::::::::::::::::::::::::::::::::
NP_001 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
600 610 620 630
696 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:46:21 2016 done: Sun Nov 6 18:46:22 2016
Total Scan time: 10.710 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]