Result of FASTA (ccds) for
pFN21AE3264
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3264, 643 aa
1>>>pF1KE3264 643 - 643 aa - 643 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9202+/-0.000913; mu= 13.9110+/- 0.055
mean_var=139.5087+/-29.568, 0's: 0 Z-trim(110.9): 99 B-trim: 481 in 1/52
Lambda= 0.108586
statistics sampled from 11879 (11990) to 11879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.368), width: 16
Scan time: 3.640
The best scores are: opt bits E(32554)
CCDS10758.1 AMFR gene_id:267|Hs108|chr16 ( 643) 4317 688.0 1e-197
CCDS8097.1 SYVN1 gene_id:84447|Hs108|chr11 ( 616) 437 80.2 9.4e-15
CCDS31605.1 SYVN1 gene_id:84447|Hs108|chr11 ( 617) 437 80.2 9.4e-15
>>CCDS10758.1 AMFR gene_id:267|Hs108|chr16 (643 aa)
initn: 4317 init1: 4317 opt: 4317 Z-score: 3663.1 bits: 688.0 E(32554): 1e-197
Smith-Waterman score: 4317; 100.0% identity (100.0% similar) in 643 aa overlap (1-643:1-643)
10 20 30 40 50 60
pF1KE3 MPLLFLERFPWPSLRTYTGLSGLALLGTIISAYRALSQPEAGPGEPDQLTASLQPEPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPLLFLERFPWPSLRTYTGLSGLALLGTIISAYRALSQPEAGPGEPDQLTASLQPEPPAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCIVFGPLRVSERQHLKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLCKDRFEYLSFSPTTPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHTLAFMAAESLLVTVRTAHVILRYVIH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LFHEVQRRIRRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARKLPCGHLF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HNSCLRSWLEQDTSCPTCRMSLNIADNNRVREEHQGENLDENLVPVAAAEGRPRLNQHNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HNSCLRSWLEQDTSCPTCRMSLNIADNNRVREEHQGENLDENLVPVAAAEGRPRLNQHNH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 FFHFDGSRIASWLPSFSVEVMHTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FFHFDGSRIASWLPSFSVEVMHTTNILGITQASNSQLNAMAHQIQEMFPQVPYHLVLQDL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 QLTRSVEITTDNILEGRIQVPFPTQRSDSIRPALNSPVERPSSDQEEGETSAQTERVPLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QLTRSVEITTDNILEGRIQVPFPTQRSDSIRPALNSPVERPSSDQEEGETSAQTERVPLD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 LSPRLEETLDFGEVEVEPSEVEDFEARGSRFSKSADERQRMLVQRKDELLQQARKRFLNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LSPRLEETLDFGEVEVEPSEVEDFEARGSRFSKSADERQRMLVQRKDELLQQARKRFLNK
550 560 570 580 590 600
610 620 630 640
pF1KE3 SSEDDAASESFLPSEGASSDPVTLRRRMLAAAAERRLQKQQTS
:::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSEDDAASESFLPSEGASSDPVTLRRRMLAAAAERRLQKQQTS
610 620 630 640
>>CCDS8097.1 SYVN1 gene_id:84447|Hs108|chr11 (616 aa)
initn: 444 init1: 180 opt: 437 Z-score: 378.4 bits: 80.2 E(32554): 9.4e-15
Smith-Waterman score: 438; 28.8% identity (58.8% similar) in 320 aa overlap (76-382:35-333)
50 60 70 80 90 100
pF1KE3 PDQLTASLQPEPPAPARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCI
:: ..: . :: : ...:..:.. .
CCDS80 AVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKV
10 20 30 40 50 60
110 120 130 140 150 160
pF1KE3 VFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLC
:: ::..: .:: .. : . . . : :. . . : :. :.::. . :
CCDS80 FFGQLRAAEMEHLLERSW-YAVTETCLAFTVFRDDFSPRFVAL---FTLLLFLKCFHWLA
70 80 90 100 110 120
170 180 190 200 210
pF1KE3 KDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHT------LAFM
.:: ... ::. : :..::. . :. .. :.. : :.:
CCDS80 EDRVDFMERSPNISWLFHCRIVSLMFLL-----GILDFLFVSHAYHSILTRGASVQLVFG
130 140 150 160 170
220 230 240 250 260 270
pF1KE3 AAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGTYVYYTD----FVMELTLLS-LDLM
..:.:. . ....::.: ::. :. :..:..:. ::. :. : .. . .:
CCDS80 FEYAILMTM-VLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIM
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE3 HHIHML-LFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEE
..: . :: : ... .: . . : : . :.. ::.. . :::::
CCDS80 IKVHTFPLF-------AIRPMYLAMRQFKKAVTDAIMSR----RAIRNMNTLYPDATPEE
240 250 260 270 280
340 350 360 370 380 390
pF1KE3 LAVNNDDCAICWDSM-QAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRVRE
: . .. : :: . : .:..:::.:.::.::::::.... .::::::..
CCDS80 LQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSP
290 300 310 320 330 340
400 410 420 430 440 450
pF1KE3 EHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILGITQA
CCDS80 PPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEA
350 360 370 380 390 400
>>CCDS31605.1 SYVN1 gene_id:84447|Hs108|chr11 (617 aa)
initn: 433 init1: 169 opt: 437 Z-score: 378.3 bits: 80.2 E(32554): 9.4e-15
Smith-Waterman score: 438; 28.8% identity (58.8% similar) in 320 aa overlap (76-382:35-333)
50 60 70 80 90 100
pF1KE3 PDQLTASLQPEPPAPARPSAGGPRARDVAQYLLSDSLFVWVLVNTACCVLMLVAKLIQCI
:: ..: . :: : ...:..:.. .
CCDS31 AVMMAASLALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKV
10 20 30 40 50 60
110 120 130 140 150 160
pF1KE3 VFGPLRVSERQHLKDKFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFAGLVFLHLMVQLC
:: ::..: .:: .. : . . . : :. . . : :. :.::. . :
CCDS31 FFGQLRAAEMEHLLERSW-YAVTETCLAFTVFRDDFSPRFVAL---FTLLLFLKCFHWLA
70 80 90 100 110 120
170 180 190 200 210
pF1KE3 KDRFEYLSFSPTTPMSSHGRVLSLLVAMLLSCCGLAAVCSITGYTHGMHT------LAFM
.:: ... ::. : :..::. . :. .. :.. : :.:
CCDS31 EDRVDFMERSPNISWLFHCRIVSLMFLL-----GILDFLFVSHAYHSILTRGASVQLVFG
130 140 150 160 170
220 230 240 250 260 270
pF1KE3 AAESLLVTVRTAHVILRYVIHLWDLNHEGTWEGKGTYVYYTD----FVMELTLLS-LDLM
..:.:. . ....::.: ::. :. :..:..:. ::. :. : .. . .:
CCDS31 FEYAILMTM-VLTIFIKYVLHSVDLQSENPWDNKAVYMLYTELFTGFIKVLLYMAFMTIM
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE3 HHIHML-LFGNIWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAVATPEE
..: . :: : ... .: . . : : . :.. ::.. . :::::
CCDS31 IKVHTFPLF-------AIRPMYLAMRQFKKAVTDAIMSR----RAIRNMNTLYPDATPEE
240 250 260 270 280
340 350 360 370 380 390
pF1KE3 LAVNNDDCAICWDSM-QAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRVRE
: . .. : :: . : .:..:::.:.::.::::::.... .::::::..
CCDS31 LQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSP
290 300 310 320 330 340
400 410 420 430 440 450
pF1KE3 EHQGENLDENLVPVAAAEGRPRLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILGITQA
CCDS31 PPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEA
350 360 370 380 390 400
643 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:38:13 2016 done: Sun Nov 6 01:38:14 2016
Total Scan time: 3.640 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]