Result of FASTA (ccds) for
pFN21AE3259
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3259, 617 aa
1>>>pF1KE3259 617 - 617 aa - 617 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5582+/-0.00109; mu= 4.8836+/- 0.066
mean_var=207.5160+/-40.104, 0's: 0 Z-trim(110.8): 14 B-trim: 0 in 0/52
Lambda= 0.089032
statistics sampled from 11840 (11846) to 11840 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.364), width: 16
Scan time: 4.150
The best scores are: opt bits E(32554)
CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 ( 585) 3898 513.8 2.5e-145
CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 ( 543) 1503 206.2 9.6e-53
CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 ( 589) 952 135.4 2.1e-31
>>CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 (585 aa)
initn: 3898 init1: 3898 opt: 3898 Z-score: 2722.6 bits: 513.8 E(32554): 2.5e-145
Smith-Waterman score: 3898; 100.0% identity (100.0% similar) in 585 aa overlap (33-617:1-585)
10 20 30 40 50 60
pF1KE3 CALFLRVKILQRVCRSRYIVHAGTCDSTAAMSGILKRKFEEVDGSSPCSSVRESDDEVSS
::::::::::::::::::::::::::::::
CCDS22 MSGILKRKFEEVDGSSPCSSVRESDDEVSS
10 20 30
70 80 90 100 110 120
pF1KE3 SESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 TLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEAST
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 LTLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LTLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRE
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 DCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLH
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 TIMKLELEKNREQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TIMKLELEKNREQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHL
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 QSAEELDCQGEEEEEEEDGSSFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QSAEELDCQGEEEEEEEDGSSFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKG
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE3 DGFVEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTLYYQIDSHIPGTPNQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DGFVEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTLYYQIDSHIPGTPNQI
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE3 SENYSERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSEND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SENYSERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSEND
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE3 SGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSIL
520 530 540 550 560 570
610
pF1KE3 HEECIKSPVVETVPV
:::::::::::::::
CCDS22 HEECIKSPVVETVPV
580
>>CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 (543 aa)
initn: 1511 init1: 1408 opt: 1503 Z-score: 1060.4 bits: 206.2 E(32554): 9.6e-53
Smith-Waterman score: 1577; 49.5% identity (72.0% similar) in 574 aa overlap (34-596:7-539)
10 20 30 40 50 60
pF1KE3 ALFLRVKILQRVCRSRYIVHAGTCDSTAAMSGILKRKFEEVDGSSPCSSVRESDDEVSSS
:: :::::..:: . ::: .::::.:::
CCDS88 MDAFTGSG-LKRKFDDVDVG---SSVSNSDDEISSS
10 20 30
70 80 90 100 110 120
pF1KE3 ESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGST
.:::: ::.:: :.. :::.:::::.:.:: :::.:. ::::::.::::::::::::::.
CCDS88 DSADSCDSLNPPTTASFTPTSILKRQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 LGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEASTL
:::..::::::.::: :::.::: :::.:::::.::::.. :.:.:::::::: ::. :
CCDS88 LGMAQRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTKNGTVESVEADGL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 TLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRED
::::.::.:::..:.:::.::::::::::.::::::::::..::.:::.::::::::::.
CCDS88 TLDDVSDEDIDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRLSREE
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 CGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHT
::::::..:::..:.:: ::::::::::::::::...::.: ::::::::::::::.:::
CCDS88 CGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHT
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 IMKLELEKNREQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHLQ
:::::::..:. . :. . .: : : :.. : . : :. .: ..::.:::
CCDS88 IMKLELESKRQVSRPAAPDEEPSPTASCSLTG--AQGSETQ--DFQEFIAENETAVMHLQ
280 290 300 310 320
370 380 390 400 410 420
pF1KE3 SAEELDCQGEEEEEEEDGSSFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKGD
::::: :. . ::: :: :. ::: .::. .: ::
CCDS88 SAEEL----ERLKAEED-SSGSSASLDSSIESLGVCILEEPLAVPEELCP----------
330 340 350 360 370
430 440 450 460 470
pF1KE3 GFVEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTL-YYQIDSH----IPGT
:.. . .:.. : ::::..... . . :. : ::. : :::.... . :
CCDS88 GLTAPILIQAQLPPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYYQVEQRPVLGVKGE
380 390 400 410 420 430
480 490 500 510 520 530
pF1KE3 PN--QISENY-SERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVC
:. . : .. .:.: ...:: ... . .: : . : . :..
CCDS88 PGTEEGSASFPKEKDL---NVFSLPVTSLVACSSTDPAALCKSEVGKT------PTL---
440 450 460 470 480
540 550 560 570 580 590
pF1KE3 CSSSENDSGVP--CNSLYPEHRSNHPQVEFHSY-LKGPSQEGFVSALNGDSHISEHPAEN
.. .: :: ::... ::. : .. ..:: . ..... .. : ..
CCDS88 ------EALLPEDCNPEEPENEDFHPSWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDS
490 500 510 520 530
600 610
pF1KE3 SLSLAEKSILHEECIKSPVVETVPV
:: :
CCDS88 SLELPLAV
540
>>CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 (589 aa)
initn: 964 init1: 567 opt: 952 Z-score: 677.5 bits: 135.4 E(32554): 2.1e-31
Smith-Waterman score: 984; 37.1% identity (61.2% similar) in 544 aa overlap (33-526:1-538)
10 20 30 40 50
pF1KE3 CALFLRVKILQRVCRSRYIVHAGTCDSTAAMSGILKRKFEEVD----------GSSPCSS
:.:.:::::...: .:: :.:
CCDS26 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQS
10 20 30
60 70 80 90 100
pF1KE3 VRESDDEVSSSESADS---G--DSVN-PSTS----SHFTPSSILKREKRLRTKNVHFSCV
: . : :.. :: : :.. :. . ::: ::::: .: : : :. .
CCDS26 -RSCSPSSSVSRAWDSEEEGPWDQMPLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGI
40 50 60 70 80
110 120 130 140 150 160
pF1KE3 TVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKL
::.:: : ::::::::.:: ::::. ::.. :...:.:::.:: : ..: ::..:.::::
CCDS26 TVFYFPRCQGFTSVPSRGGCTLGMALRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKL
90 100 110 120 130 140
170 180 190 200 210
pF1KE3 NSLKLKMTKNGTVESEEASTLTLDDISDDDIDLD------NTEVDEYFFLQPLPTKKRRA
. :. :.. :. ..: . ..: :.: ... : . ...: :::: :...:::
CCDS26 EMLQWKLSAAGVPQAEAGLPPVVDAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRA
150 160 170 180 190 200
220 230 240 250 260 270
pF1KE3 LLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCG
:::::::..:: :::.::.:.: ::::::: : .:::.::.:::::::::.:. .::::
CCDS26 LLRASGVRRIDREEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCG
210 220 230 240 250 260
280 290 300 310 320 330
pF1KE3 CTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKN----REQQIPTLNGCHSEISAHSS
: .::: : ::.::: ::.:::.::. .:.::.. :: . :. .. :
CCDS26 CCREGCENPMGRVEFNQARVQTHFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALV
270 280 290 300 310 320
340 350 360 370 380
pF1KE3 SMGPVAHS-VEYSIAD---SFEIETEPQAAVLHLQSAEELDCQGEEEEEEEDGSSFCSGV
:.:. .. ..: : .. :. ..: :: . : .: ::
CCDS26 PTFPLAKPPMNNELGDNSCSSDMTDSSTASSSASGTSEAPDCP---THPGLPGPGFQPGV
330 340 350 360 370 380
390 400 410 420 430 440
pF1KE3 TDSS-TQSLAPSESDEEEEEEEEEEEEEDDDDD-----KGDGF-VEGLGTHAEVVPLPSV
:.: .. :. :.:: ::::::: . :. .: : . : : . :
CCDS26 DDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNLSCFHPADIFGTSDPGGLASWTHSYSG
390 400 410 420 430 440
450 460 470 480 490
pF1KE3 LCYSDGTAVHESHAKNASFYANSSTLYYQIDSHIPGTPNQISENYSERDTVKNGT-----
...:. . :. .:: . :.. : . .. .::: : . .. ..: .
CCDS26 CSFTSGV-LDENANLDASCFLNGG-LEGSREGSLPGTSVPPSMDAGRSSSVDLSLSSCDS
450 460 470 480 490 500
500 510 520 530 540 550
pF1KE3 ---LSLVP-YTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSENDSGVPCNSLYP
:. .: :.. :. . . .. . : :.:
CCDS26 FELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLPGLSPPGDASSCFLESLMGFSEPAA
510 520 530 540 550 560
560 570 580 590 600 610
pF1KE3 EHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSILHEECIKSPVV
CCDS26 EALDPFIDSQFEDTVPASLMEPVPV
570 580
617 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:35:16 2016 done: Mon Nov 7 16:35:16 2016
Total Scan time: 4.150 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]