Result of FASTA (ccds) for
pFN21AE3253
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3253, 589 aa
1>>>pF1KE3253 589 - 589 aa - 589 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1514+/-0.000705; mu= 12.4724+/- 0.043
mean_var=140.5344+/-27.574, 0's: 0 Z-trim(115.2): 6 B-trim: 50 in 1/51
Lambda= 0.108189
statistics sampled from 15705 (15709) to 15705 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.483), width: 16
Scan time: 3.920
The best scores are: opt bits E(32554)
CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 ( 589) 4065 645.7 4.8e-185
CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 ( 585) 951 159.7 9.7e-39
CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 ( 543) 891 150.3 6.1e-36
>>CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 (589 aa)
initn: 4065 init1: 4065 opt: 4065 Z-score: 3435.7 bits: 645.7 E(32554): 4.8e-185
Smith-Waterman score: 4065; 99.8% identity (100.0% similar) in 589 aa overlap (1-589:1-589)
10 20 30 40 50 60
pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGILDENANLDASCFLNGGLEGSREGSLPG
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS26 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGLEGSREGSLPG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP
490 500 510 520 530 540
550 560 570 580
pF1KE3 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV
550 560 570 580
>>CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 (585 aa)
initn: 964 init1: 567 opt: 951 Z-score: 808.9 bits: 159.7 E(32554): 9.7e-39
Smith-Waterman score: 983; 37.3% identity (61.0% similar) in 544 aa overlap (1-538:1-494)
10 20 30 40 50
pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQS-RSCSPSSSVSRAWDSEEEGPWDQMPLPDR
:.:.:::::...: .:: :.: : . : :.. :: : :.. :.
CCDS22 MSGILKRKFEEVD----------GSSPCSSVRESDDEVSSSESADS---G--DSVN-PST
10 20 30 40
60 70 80 90 100 110
pF1KE3 DFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSA
. ::: ::::: .: : : :. .::.:: : ::::::::.:: ::::. ::..
CCDS22 S----SHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGSTLGMSSRHNS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 CRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDAS
:...:.:::.:: : ..: ::..:.::::. :. :.. :. ..: . ..: :.: .
CCDS22 VRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEASTLTLDDISDDD
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 VEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGC
.. : . ...: :::: :...::::::::::..:: :::.::.:.: :::::::
CCDS22 IDLD------NTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSREDCGC
170 180 190 200 210
240 250 260 270 280 290
pF1KE3 HCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTR
: .:::.::.:::::::::.:. .::::: .::: : ::.::: ::.:::.::. .
CCDS22 DCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMK
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE3 LQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTAS
:.::.. :: . :. .. : :.:. .. ..: : .. :.
CCDS22 LELEKN----REQQIPTLNGCHSEISAHSSSMGPVAHS-VEYSIAD---SFEIETEPQAA
280 290 300 310 320
360 370 380 390 400 410
pF1KE3 SSASGTSEAPDCP---THPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGN
..: :: . : .: :: :.: .. :. :.:: ::::::: .
CCDS22 VLHLQSAEELDCQGEEEEEEEDGSSFCSGVTDSS-TQSLAPSESDEEEEEEEEEEEEEDD
330 340 350 360 370 380
420 430 440 450 460 470
pF1KE3 LDNLSCFHPADIFGTSDPGGLASWTHSYSGCSFTSGI-LDENANLDASCFLNGG-LEGSR
:. .: : . : : . : ...: . :. .:: . :.. : .
CCDS22 DDD-----KGDGF-VEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTLYYQI
390 400 410 420 430
480 490 500 510 520 530
pF1KE3 EGSLPGTSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEA
.. .::: :.. . : : .. :. .: :.. :. . . .. . :
CCDS22 DSHIPGT---PNQISENYSERDTVKNGT-----LSLVP-YTMTPEQFVDYARQAEEAYGA
440 450 460 470 480 490
540 550 560 570 580
pF1KE3 PHFPLPGLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV
:.:
CCDS22 SHYPAANPSVIVCCSSSENDSGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGD
500 510 520 530 540 550
>>CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 (543 aa)
initn: 994 init1: 551 opt: 891 Z-score: 758.8 bits: 150.3 E(32554): 6.1e-36
Smith-Waterman score: 905; 49.4% identity (68.8% similar) in 324 aa overlap (5-323:9-296)
10 20 30 40 50
pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSS--SSGCQSRSCSPSSSVSRAWDSEEEGPWDQM
::::::..: .::::.:.. ::. .. :: :..
CCDS88 MDAFTGSGLKRKFDDVDV-GSSVSNSDDEISSSDSADSC------------------DSL
10 20 30 40
60 70 80 90 100 110
pF1KE3 PLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMA
: :::: ::::: .. : : :: .::.:: : ::::::::.:: .::::
CCDS88 NPPT-----TASFTPTSILKRQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMA
50 60 70 80 90
120 130 140 150 160 170
pF1KE3 LRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAG-VPQAEA-GLPPVV
::.. : ..: :::::: ..: ::..::::::. . ::. : : ..:: ::
CCDS88 QRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTKNGTVESVEADGL----
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 DAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQ
..::.: .:: . : . .... :::: :..:::::::::::.::: :::.::.:.:
CCDS88 -TLDDVS-DED--IDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRL
160 170 180 190 200
240 250 260 270 280 290
pF1KE3 SREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTH
:::.::: : ::::.:.:: ::::::.:. .::::: :.:: : ::.::: ::.::
CCDS88 SREECGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTH
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE3 FIHTLTRLQLEQEAESFRELEAPAQGSP-PSPGEEALVPTFPLAKPPMNNELGDNSCSSD
..::. .:.:: : :.. :: . :::
CCDS88 YLHTIMKLELE----SKRQVSRPAAPDEEPSPTASCSLTGAQGSETQDFQEFIAENETAV
270 280 290 300 310 320
360 370 380 390 400 410
pF1KE3 MTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEE
CCDS88 MHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCILEEPLAVPEELCPGLTAPILIQAQ
330 340 350 360 370 380
589 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:52:51 2016 done: Mon Nov 7 16:52:52 2016
Total Scan time: 3.920 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]