Result of FASTA (omim) for
pFN21AE3242
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3242, 565 aa
1>>>pF1KE3242 565 - 565 aa - 565 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5956+/-0.000362; mu= -0.9754+/- 0.022
mean_var=242.5882+/-50.059, 0's: 0 Z-trim(122.1): 175 B-trim: 570 in 1/55
Lambda= 0.082345
statistics sampled from 39387 (39590) to 39387 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.464), width: 16
Scan time: 9.390
The best scores are: opt bits E(85289)
NP_036607 (OMIM: 604729) ubiquitin carboxyl-termin ( 565) 3900 476.4 1e-133
NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565) 3900 476.4 1e-133
XP_016856529 (OMIM: 604729) PREDICTED: ubiquitin c ( 594) 3900 476.4 1.1e-133
NP_001306776 (OMIM: 604729) ubiquitin carboxyl-ter ( 594) 3900 476.4 1.1e-133
NP_001306777 (OMIM: 604729) ubiquitin carboxyl-ter ( 551) 3438 421.5 3.4e-117
XP_016856527 (OMIM: 604729) PREDICTED: ubiquitin c ( 639) 3201 393.4 1.1e-108
XP_016856526 (OMIM: 604729) PREDICTED: ubiquitin c ( 639) 3201 393.4 1.1e-108
XP_016856528 (OMIM: 604729) PREDICTED: ubiquitin c ( 639) 3201 393.4 1.1e-108
XP_016856525 (OMIM: 604729) PREDICTED: ubiquitin c ( 668) 3201 393.4 1.2e-108
XP_011507716 (OMIM: 604729) PREDICTED: ubiquitin c ( 415) 2667 329.9 1e-89
XP_016856530 (OMIM: 604729) PREDICTED: ubiquitin c ( 455) 1922 241.4 4.8e-63
XP_016856531 (OMIM: 604729) PREDICTED: ubiquitin c ( 330) 1066 139.6 1.5e-32
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352) 789 106.7 1.3e-22
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362) 789 106.7 1.3e-22
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396) 789 106.7 1.4e-22
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 789 106.9 2e-22
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605) 789 106.9 2e-22
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605) 789 106.9 2e-22
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 495 72.1 9e-12
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 495 72.1 9e-12
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 495 72.1 9.6e-12
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 495 72.1 1e-11
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 495 72.1 1e-11
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 495 72.1 1e-11
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 495 72.1 1e-11
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 495 72.1 1e-11
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 495 72.1 1e-11
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 495 72.1 1e-11
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 495 72.1 1e-11
XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 452 66.7 1.7e-10
XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 452 66.7 1.7e-10
NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 452 66.8 1.8e-10
XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 452 66.8 1.9e-10
XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 452 66.8 1.9e-10
XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 452 66.8 1.9e-10
NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 452 66.8 2e-10
XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin c ( 351) 403 60.8 8.1e-09
XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin c ( 648) 395 60.1 2.6e-08
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 395 60.2 3.2e-08
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 395 60.2 3.2e-08
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 395 60.2 3.5e-08
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 395 60.2 3.5e-08
XP_011542290 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 389 59.4 4.4e-08
XP_005272731 (OMIM: 300050) PREDICTED: ubiquitin c ( 690) 389 59.4 4.4e-08
NP_004642 (OMIM: 300050) ubiquitin carboxyl-termin ( 963) 389 59.5 5.7e-08
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 377 58.1 1.5e-07
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 377 58.1 1.5e-07
XP_016856213 (OMIM: 615146) PREDICTED: ubiquitin c ( 812) 344 54.1 2e-06
NP_963920 (OMIM: 615146) ubiquitin carboxyl-termin ( 828) 344 54.1 2.1e-06
XP_016856211 (OMIM: 615146) PREDICTED: ubiquitin c ( 903) 344 54.1 2.2e-06
>>NP_036607 (OMIM: 604729) ubiquitin carboxyl-terminal h (565 aa)
initn: 3900 init1: 3900 opt: 3900 Z-score: 2521.5 bits: 476.4 E(85289): 1e-133
Smith-Waterman score: 3900; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:1-565)
10 20 30 40 50 60
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 DFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPV
490 500 510 520 530 540
550 560
pF1KE3 SENQVASSEGYVLFYQLMQEPPRCL
:::::::::::::::::::::::::
NP_036 SENQVASSEGYVLFYQLMQEPPRCL
550 560
>>NP_001014443 (OMIM: 604729) ubiquitin carboxyl-termina (565 aa)
initn: 3900 init1: 3900 opt: 3900 Z-score: 2521.5 bits: 476.4 E(85289): 1e-133
Smith-Waterman score: 3900; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:1-565)
10 20 30 40 50 60
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 DFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPV
490 500 510 520 530 540
550 560
pF1KE3 SENQVASSEGYVLFYQLMQEPPRCL
:::::::::::::::::::::::::
NP_001 SENQVASSEGYVLFYQLMQEPPRCL
550 560
>>XP_016856529 (OMIM: 604729) PREDICTED: ubiquitin carbo (594 aa)
initn: 3900 init1: 3900 opt: 3900 Z-score: 2521.2 bits: 476.4 E(85289): 1.1e-133
Smith-Waterman score: 3900; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:30-594)
10 20 30
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAP
:::::::::::::::::::::::::::::::
XP_016 MAGCGGAQREDCSRPERTLSTKVQPVVSTMPQASEHRLGRTREPPVNIQPRVGSKLPFAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE3 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE3 VQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHS
490 500 510 520 530 540
520 530 540 550 560
pF1KE3 GSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
550 560 570 580 590
>>NP_001306776 (OMIM: 604729) ubiquitin carboxyl-termina (594 aa)
initn: 3900 init1: 3900 opt: 3900 Z-score: 2521.2 bits: 476.4 E(85289): 1.1e-133
Smith-Waterman score: 3900; 100.0% identity (100.0% similar) in 565 aa overlap (1-565:30-594)
10 20 30
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAP
:::::::::::::::::::::::::::::::
NP_001 MAGCGGAQREDCSRPERTLSTKVQPVVSTMPQASEHRLGRTREPPVNIQPRVGSKLPFAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE3 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE3 VQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHS
490 500 510 520 530 540
520 530 540 550 560
pF1KE3 GSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
550 560 570 580 590
>>NP_001306777 (OMIM: 604729) ubiquitin carboxyl-termina (551 aa)
initn: 3422 init1: 3422 opt: 3438 Z-score: 2225.1 bits: 421.5 E(85289): 3.4e-117
Smith-Waterman score: 3761; 97.5% identity (97.5% similar) in 565 aa overlap (1-565:1-551)
10 20 30 40 50 60
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGV
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 DFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPV
::::::::::::::::: :::::::::::::::::::::::::::::
NP_001 DFPLQRLSLGDFASDKA--------------GSVHYGHYTALCRCQTGWHVYNDSRVSPV
490 500 510 520
550 560
pF1KE3 SENQVASSEGYVLFYQLMQEPPRCL
:::::::::::::::::::::::::
NP_001 SENQVASSEGYVLFYQLMQEPPRCL
530 540 550
>>XP_016856527 (OMIM: 604729) PREDICTED: ubiquitin carbo (639 aa)
initn: 3191 init1: 3191 opt: 3201 Z-score: 2072.0 bits: 393.4 E(85289): 1.1e-108
Smith-Waterman score: 3442; 87.6% identity (87.6% similar) in 597 aa overlap (1-523:1-597)
10 20 30 40 50 60
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
370 380 390 400 410 420
430 440 450 460
pF1KE3 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLH------------------
::::::::::::::::::::::::::::::::::::::::::
XP_016 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHILIFRFLLLLGYLPYILF
430 440 450 460 470 480
pF1KE3 --------------------------------------------------------LNRF
::::
XP_016 PPCFQRIEFSLGKVCHPLFHKMLPVCREWGEDSFQDRRSSPQRPTASQMLLNQGLDLNRF
490 500 510 520 530 540
470 480 490 500 510 520
pF1KE3 SASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQ
550 560 570 580 590 600
530 540 550 560
pF1KE3 TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
XP_016 TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
610 620 630
>--
initn: 300 init1: 300 opt: 300 Z-score: 209.4 bits: 48.8 E(85289): 6.3e-05
Smith-Waterman score: 300; 100.0% identity (100.0% similar) in 42 aa overlap (524-565:598-639)
500 510 520 530 540 550
pF1KE3 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
::::::::::::::::::::::::::::::
XP_016 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
570 580 590 600 610 620
560
pF1KE3 FYQLMQEPPRCL
::::::::::::
XP_016 FYQLMQEPPRCL
630
>>XP_016856526 (OMIM: 604729) PREDICTED: ubiquitin carbo (639 aa)
initn: 3191 init1: 3191 opt: 3201 Z-score: 2072.0 bits: 393.4 E(85289): 1.1e-108
Smith-Waterman score: 3442; 87.6% identity (87.6% similar) in 597 aa overlap (1-523:1-597)
10 20 30 40 50 60
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
370 380 390 400 410 420
430 440 450 460
pF1KE3 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLH------------------
::::::::::::::::::::::::::::::::::::::::::
XP_016 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHILIFRFLLLLGYLPYILF
430 440 450 460 470 480
pF1KE3 --------------------------------------------------------LNRF
::::
XP_016 PPCFQRIEFSLGKVCHPLFHKMLPVCREWGEDSFQDRRSSPQRPTASQMLLNQGLDLNRF
490 500 510 520 530 540
470 480 490 500 510 520
pF1KE3 SASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQ
550 560 570 580 590 600
530 540 550 560
pF1KE3 TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
XP_016 TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
610 620 630
>--
initn: 300 init1: 300 opt: 300 Z-score: 209.4 bits: 48.8 E(85289): 6.3e-05
Smith-Waterman score: 300; 100.0% identity (100.0% similar) in 42 aa overlap (524-565:598-639)
500 510 520 530 540 550
pF1KE3 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
::::::::::::::::::::::::::::::
XP_016 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
570 580 590 600 610 620
560
pF1KE3 FYQLMQEPPRCL
::::::::::::
XP_016 FYQLMQEPPRCL
630
>>XP_016856528 (OMIM: 604729) PREDICTED: ubiquitin carbo (639 aa)
initn: 3191 init1: 3191 opt: 3201 Z-score: 2072.0 bits: 393.4 E(85289): 1.1e-108
Smith-Waterman score: 3442; 87.6% identity (87.6% similar) in 597 aa overlap (1-523:1-597)
10 20 30 40 50 60
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPQASEHRLGRTREPPVNIQPRVGSKLPFAPRARSKERRNPASGPNPMLRPLPPRPGLPD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERLKKLELGRGRTSGPRPRGPLRADHGVPLPGSPPPTVALPLPSRTNLARSKSVSSGDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMGIALGGHRGTGELGAALSRLALRPEPPTLRRSTSLRRLGGFPGPPTLFSIRTEPPASH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSFHMISARSSEPFYSDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRRDFRQEVPGGGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCF
370 380 390 400 410 420
430 440 450 460
pF1KE3 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLH------------------
::::::::::::::::::::::::::::::::::::::::::
XP_016 NLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHILIFRFLLLLGYLPYILF
430 440 450 460 470 480
pF1KE3 --------------------------------------------------------LNRF
::::
XP_016 PPCFQRIEFSLGKVCHPLFHKMLPVCREWGEDSFQDRRSSPQRPTASQMLLNQGLDLNRF
490 500 510 520 530 540
470 480 490 500 510 520
pF1KE3 SASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQ
550 560 570 580 590 600
530 540 550 560
pF1KE3 TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
XP_016 TGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPRCL
610 620 630
>--
initn: 300 init1: 300 opt: 300 Z-score: 209.4 bits: 48.8 E(85289): 6.3e-05
Smith-Waterman score: 300; 100.0% identity (100.0% similar) in 42 aa overlap (524-565:598-639)
500 510 520 530 540 550
pF1KE3 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
::::::::::::::::::::::::::::::
XP_016 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
570 580 590 600 610 620
560
pF1KE3 FYQLMQEPPRCL
::::::::::::
XP_016 FYQLMQEPPRCL
630
>>XP_016856525 (OMIM: 604729) PREDICTED: ubiquitin carbo (668 aa)
initn: 3191 init1: 3191 opt: 3201 Z-score: 2071.7 bits: 393.4 E(85289): 1.2e-108
Smith-Waterman score: 3442; 87.6% identity (87.6% similar) in 597 aa overlap (1-523:30-626)
10 20 30
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAP
:::::::::::::::::::::::::::::::
XP_016 MAGCGGAQREDCSRPERTLSTKVQPVVSTMPQASEHRLGRTREPPVNIQPRVGSKLPFAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE3 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE3 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT
430 440 450 460 470 480
460
pF1KE3 VQRFPRILVLH-------------------------------------------------
:::::::::::
XP_016 VQRFPRILVLHILIFRFLLLLGYLPYILFPPCFQRIEFSLGKVCHPLFHKMLPVCREWGE
490 500 510 520 530 540
470 480 490
pF1KE3 -------------------------LNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA
:::::::::::::::::::::::::::::::::::
XP_016 DSFQDRRSSPQRPTASQMLLNQGLDLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA
550 560 570 580 590 600
500 510 520 530 540 550
pF1KE3 GSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQL
::::::::::::::::::::::::::
XP_016 GSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQL
610 620 630 640 650 660
>--
initn: 300 init1: 300 opt: 300 Z-score: 209.2 bits: 48.8 E(85289): 6.5e-05
Smith-Waterman score: 300; 100.0% identity (100.0% similar) in 42 aa overlap (524-565:627-668)
500 510 520 530 540 550
pF1KE3 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
::::::::::::::::::::::::::::::
XP_016 SDKAGSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVL
600 610 620 630 640 650
560
pF1KE3 FYQLMQEPPRCL
::::::::::::
XP_016 FYQLMQEPPRCL
660
>>XP_011507716 (OMIM: 604729) PREDICTED: ubiquitin carbo (415 aa)
initn: 2667 init1: 2667 opt: 2667 Z-score: 1731.8 bits: 329.9 E(85289): 1e-89
Smith-Waterman score: 2667; 100.0% identity (100.0% similar) in 386 aa overlap (1-386:30-415)
10 20 30
pF1KE3 MPQASEHRLGRTREPPVNIQPRVGSKLPFAP
:::::::::::::::::::::::::::::::
XP_011 MAGCGGAQREDCSRPERTLSTKVQPVVSTMPQASEHRLGRTREPPVNIQPRVGSKLPFAP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RARSKERRNPASGPNPMLRPLPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVPLP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSPPPTVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE3 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRSTSLRRLGGFPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDDKMAHHTLLLGSGH
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE3 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE3 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE3 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA
370 380 390 400 410
400 410 420 430 440 450
pF1KE3 TTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLT
565 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:24:53 2016 done: Mon Nov 7 03:24:54 2016
Total Scan time: 9.390 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]