FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3237, 552 aa
  1>>>pF1KE3237 552 - 552 aa - 552 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5860+/-0.00116; mu= 12.8840+/- 0.070
 mean_var=106.1680+/-21.544, 0's: 0 Z-trim(103.7): 16  B-trim: 0 in 0/50
 Lambda= 0.124474
 statistics sampled from 7550 (7554) to 7550 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.232), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS4089.1 RIOK2 gene_id:55781|Hs108|chr5          ( 552) 3646 666.1  3e-191
CCDS54884.1 RIOK2 gene_id:55781|Hs108|chr5         ( 474) 3103 568.6  6e-162


>>CCDS4089.1 RIOK2 gene_id:55781|Hs108|chr5               (552 aa)
 initn: 3646 init1: 3646 opt: 3646  Z-score: 3547.0  bits: 666.1 E(32554): 3e-191
Smith-Waterman score: 3646; 100.0% identity (100.0% similar) in 552 aa overlap (1-552:1-552)

               10        20        30        40        50        60
pF1KE3 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 TLSITSSGSAVSCSTIPPELVKQKVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 TLSITSSGSAVSCSTIPPELVKQKVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNI
              490       500       510       520       530       540

              550  
pF1KE3 KSSLEAASFWGE
       ::::::::::::
CCDS40 KSSLEAASFWGE
              550  

>>CCDS54884.1 RIOK2 gene_id:55781|Hs108|chr5              (474 aa)
 initn: 3103 init1: 3103 opt: 3103  Z-score: 3021.0  bits: 568.6 E(32554): 6e-162
Smith-Waterman score: 3103; 100.0% identity (100.0% similar) in 466 aa overlap (1-466:1-466)

               10        20        30        40        50        60
pF1KE3 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LIAWERTKTVQGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ALKLHRLGRTSFRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPID
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YNRHAVVMELINGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESERNCLE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTR
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS54 NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRYRLLSIAF      
              430       440       450       460       470          

              490       500       510       520       530       540
pF1KE3 TLSITSSGSAVSCSTIPPELVKQKVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNI




552 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:11:28 2016 done: Mon Nov  7 17:11:28 2016
 Total Scan time:  3.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]