Result of FASTA (ccds) for
pFN21AE3233
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3233, 543 aa
1>>>pF1KE3233 543 - 543 aa - 543 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5007+/-0.000804; mu= 14.0333+/- 0.049
mean_var=105.8590+/-20.722, 0's: 0 Z-trim(111.3): 7 B-trim: 0 in 0/51
Lambda= 0.124655
statistics sampled from 12253 (12258) to 12253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.377), width: 16
Scan time: 3.860
The best scores are: opt bits E(32554)
CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 ( 543) 3635 664.2 1.1e-190
CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 ( 585) 1503 280.8 3e-75
CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 ( 589) 891 170.8 4e-42
>>CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 (543 aa)
initn: 3635 init1: 3635 opt: 3635 Z-score: 3537.2 bits: 664.2 E(32554): 1.1e-190
Smith-Waterman score: 3635; 100.0% identity (100.0% similar) in 543 aa overlap (1-543:1-543)
10 20 30 40 50 60
pF1KE3 MDAFTGSGLKRKFDDVDVGSSVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILKRQKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MDAFTGSGLKRKFDDVDVGSSVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILKRQKQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEVNHRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEVNHRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ILREHLKEEKLHAKKMKLTKNGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQPLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 ILREHLKEEKLHAKKMKLTKNGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQPLPT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIKCQVDRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIKCQVDRM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESKRQVSRPAAPDEEPSPTASC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESKRQVSRPAAPDEEPSPTASC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 SLTGAQGSETQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SLTGAQGSETQDFQEFIAENETAVMHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 LEEPLAVPEELCPGLTAPILIQAQLPPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LEEPLAVPEELCPGLTAPILIQAQLPPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 QVEQRPVLGVKGEPGTEEGSASFPKEKDLNVFSLPVTSLVACSSTDPAALCKSEVGKTPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 QVEQRPVLGVKGEPGTEEGSASFPKEKDLNVFSLPVTSLVACSSTDPAALCKSEVGKTPT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 LEALLPEDCNPEEPENEDFHPSWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LEALLPEDCNPEEPENEDFHPSWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELP
490 500 510 520 530 540
pF1KE3 LAV
:::
CCDS88 LAV
>>CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 (585 aa)
initn: 1511 init1: 1408 opt: 1503 Z-score: 1464.5 bits: 280.8 E(32554): 3e-75
Smith-Waterman score: 1577; 49.7% identity (71.2% similar) in 572 aa overlap (7-539:2-564)
10 20 30 40 50
pF1KE3 MDAFTGSG-LKRKFDDVDVGS---SVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILK
:: :::::..:: .: :: .::::.:::.:::: ::.:: :.. :::.::::
CCDS22 MSGILKRKFEEVDGSSPCSSVRESDDEVSSSESADSGDSVNPSTSSHFTPSSILK
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 RQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEV
:.:.:: :::.:. ::::::.::::::::::::::.:::..::::::.::: :::.:::
CCDS22 REKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQER
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 NHREILREHLKEEKLHAKKMKLTKNGTVESVEADGLTLDDVSDEDIDVENVEVDDYFFLQ
:::.:::::.::::.. :.:.:::::::: ::. :::::.::.:::..:.:::.:::::
CCDS22 LHREMLREHLREEKLNSLKLKMTKNGTVESEEASTLTLDDISDDDIDLDNTEVDEYFFLQ
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 PLPTKRRRALLRASGVHRIDAEEKQELRAIRLSREECGCDCRLYCDPEACACSQAGIKCQ
:::::.::::::::::..::.:::.::::::::::.::::::..:::..:.:: ::::::
CCDS22 PLPTKKRRALLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIKCQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 VDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHTIMKLELESKRQVSRPAAPDEEPSP
::::::::::...::.: ::::::::::::::.::::::::::..:. . :. .
CCDS22 VDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKNREQQIPTLNGCHSEI
240 250 260 270 280 290
300 310 320 330 340
pF1KE3 TASCSLTG--AQGSETQ--DFQEFIAENETAVMHLQSAEEL----ERLKAEED-SSGSSA
.: : : :.. : . : :. .: ..::.:::::::: :. . ::: :: :.
CCDS22 SAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHLQSAEELDCQGEEEEEEEDGSSFCSG
300 310 320 330 340 350
350 360 370 380 390
pF1KE3 SLDSSIESLGVCILEEPLAVPEELCP----------GLTAPILIQAQLPPGSSVLCFTEN
::: .::. .: :: :.. . .:.. : ::::....
CCDS22 VTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKGDGFVEGLGTHAEVVPLPSVLCYSDG
360 370 380 390 400 410
400 410 420 430 440 450
pF1KE3 SDHPTASTVNSPSYLNSGPLVYYQVEQRPVLGVKGEPGTEEGSASFPKEKDL---NVFSL
. . . :. : ::. : :::.... ::: . . .:.: ...::
CCDS22 TAVHESHAKNASFYANSSTL-YYQIDSHI-------PGTPNQISENYSERDTVKNGTLSL
420 430 440 450 460
460 470 480 490 500
pF1KE3 PVTSLVACSSTDPAALCKSEVGKT------PTL-------EALLPEDCNPEEPENEDFHP
... . .: : . : . :.. : :: ::... ::
CCDS22 VPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSENDSGVPCNSLYPEHRSNHP
470 480 490 500 510 520
510 520 530 540
pF1KE3 SWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELPLAV
. : .. ..:: . ..... .. : ..:: :
CCDS22 QVEFHSY-LKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSILHEECIKSPVVETVPV
530 540 550 560 570 580
>>CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 (589 aa)
initn: 994 init1: 551 opt: 891 Z-score: 869.7 bits: 170.8 E(32554): 4e-42
Smith-Waterman score: 905; 49.1% identity (69.1% similar) in 324 aa overlap (9-296:5-323)
10 20 30 40
pF1KE3 MDAFTGSGLKRKFDDVDV-GSSVSNSDDEISSSDSADSC------------------DSL
::::::..: .::::.:.. ::. .. :: :..
CCDS26 MTGLLKRKFDQLDEDNSSVSSSSS--SSGCQSRSCSPSSSVSRAWDSEEEGPWDQM
10 20 30 40 50
50 60 70 80 90
pF1KE3 NPPTTA-----SFTPTSILKRQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMA
: :::: ::::: .. : : :: .::.:: : ::::::::.:: .::::
CCDS26 PLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KE3 QRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTKNGTVESVEADGL----
::.. : ..: :::::: ..: ::..::::::. . ::. : : ..:: ::
CCDS26 LRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAG-VPQAEA-GLPPVV
120 130 140 150 160 170
160 170 180 190 200
pF1KE3 -TLDDVS-DED--IDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRL
..::.: .:: . : . .... :::: :..:::::::::::.::: :::.::.:.:
CCDS26 DAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQ
180 190 200 210 220 230
210 220 230 240 250 260
pF1KE3 SREECGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTH
:::.::: : ::::.:.:: ::::::.:. .::::: :.:: : ::.::: ::.::
CCDS26 SREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTH
240 250 260 270 280 290
270 280 290 300 310 320
pF1KE3 YLHTIMKLELESK----RQVSRPAAPDEEPSPTASCSLTGAQGSETQDFQEFIAENETAV
..::. .:.::.. :.. :: . :::
CCDS26 FIHTLTRLQLEQEAESFRELEAPAQGSP-PSPGEEALVPTFPLAKPPMNNELGDNSCSSD
300 310 320 330 340 350
330 340 350 360 370 380
pF1KE3 MHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCILEEPLAVPEELCPGLTAPILIQAQ
CCDS26 MTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEE
360 370 380 390 400 410
543 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:49:32 2016 done: Sun Nov 6 14:49:32 2016
Total Scan time: 3.860 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]