FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3230, 536 aa
  1>>>pF1KE3230 536 - 536 aa - 536 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4337+/-0.000886; mu= 18.0502+/- 0.053
 mean_var=68.3826+/-13.504, 0's: 0 Z-trim(105.9): 15  B-trim: 0 in 0/50
 Lambda= 0.155096
 statistics sampled from 8675 (8678) to 8675 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.267), width:  16
 Scan time:  3.160

The best scores are:                                      opt bits E(32554)
CCDS2678.1 XYLB gene_id:9942|Hs108|chr3            ( 536) 3611 817.2       0


>>CCDS2678.1 XYLB gene_id:9942|Hs108|chr3                 (536 aa)
 initn: 3611 init1: 3611 opt: 3611  Z-score: 4363.9  bits: 817.2 E(32554):    0
Smith-Waterman score: 3611; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536)

               10        20        30        40        50        60
pF1KE3 MAEHAPRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MAEHAPRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VTSPVLMWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 VTSPVLMWVQALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 QQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 TSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 TSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 ALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 ALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 IHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 IHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHG
              430       440       450       460       470       480

              490       500       510       520       530      
pF1KE3 LAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTRGPPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTRGPPE
              490       500       510       520       530      




536 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:39:32 2016 done: Sun Nov  6 01:39:33 2016
 Total Scan time:  3.160 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]