Result of FASTA (omim) for
pFN21AE3225
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3225, 517 aa
1>>>pF1KE3225 517 - 517 aa - 517 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4069+/-0.000376; mu= 8.6020+/- 0.023
mean_var=129.9595+/-27.617, 0's: 0 Z-trim(117.0): 160 B-trim: 857 in 1/53
Lambda= 0.112505
statistics sampled from 28521 (28715) to 28521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.337), width: 16
Scan time: 10.760
The best scores are: opt bits E(85289)
NP_116052 (OMIM: 612492) ubiquitin carboxyl-termin ( 517) 3558 589.0 1.1e-167
XP_005254019 (OMIM: 612492) PREDICTED: ubiquitin c ( 516) 3539 585.9 9.4e-167
NP_001288104 (OMIM: 612492) ubiquitin carboxyl-ter ( 486) 3373 559.0 1.2e-158
XP_006719716 (OMIM: 612492) PREDICTED: ubiquitin c ( 486) 3373 559.0 1.2e-158
XP_005254022 (OMIM: 612492) PREDICTED: ubiquitin c ( 456) 2740 456.2 9.3e-128
XP_016875537 (OMIM: 612492) PREDICTED: ubiquitin c ( 554) 2703 450.3 7e-126
XP_016875538 (OMIM: 612492) PREDICTED: ubiquitin c ( 553) 2684 447.2 5.9e-125
XP_011537196 (OMIM: 612492) PREDICTED: ubiquitin c ( 368) 2566 427.9 2.5e-119
XP_016875541 (OMIM: 612492) PREDICTED: ubiquitin c ( 523) 2518 420.2 7.3e-117
XP_016875540 (OMIM: 612492) PREDICTED: ubiquitin c ( 523) 2518 420.2 7.3e-117
XP_016875539 (OMIM: 612492) PREDICTED: ubiquitin c ( 523) 2518 420.2 7.3e-117
XP_016875542 (OMIM: 612492) PREDICTED: ubiquitin c ( 493) 1885 317.5 5.9e-86
XP_016875543 (OMIM: 612492) PREDICTED: ubiquitin c ( 405) 1711 289.2 1.6e-77
XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 247 51.6 5.7e-06
XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 247 51.6 5.7e-06
NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 247 51.6 6.2e-06
XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 247 51.6 6.4e-06
XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 247 51.6 6.4e-06
XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 247 51.6 6.4e-06
NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 247 51.6 6.6e-06
NP_001306777 (OMIM: 604729) ubiquitin carboxyl-ter ( 551) 234 49.5 3e-05
NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565) 234 49.5 3.1e-05
NP_036607 (OMIM: 604729) ubiquitin carboxyl-termin ( 565) 234 49.5 3.1e-05
XP_016856529 (OMIM: 604729) PREDICTED: ubiquitin c ( 594) 234 49.5 3.2e-05
NP_001306776 (OMIM: 604729) ubiquitin carboxyl-ter ( 594) 234 49.5 3.2e-05
XP_016856530 (OMIM: 604729) PREDICTED: ubiquitin c ( 455) 219 47.0 0.00014
XP_016856528 (OMIM: 604729) PREDICTED: ubiquitin c ( 639) 219 47.1 0.00018
XP_016856527 (OMIM: 604729) PREDICTED: ubiquitin c ( 639) 219 47.1 0.00018
XP_016856526 (OMIM: 604729) PREDICTED: ubiquitin c ( 639) 219 47.1 0.00018
XP_016856525 (OMIM: 604729) PREDICTED: ubiquitin c ( 668) 219 47.1 0.00019
XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288) 208 45.5 0.0011
XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327) 208 45.5 0.0012
XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558) 208 45.5 0.0013
XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572) 208 45.6 0.0013
XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601) 208 45.6 0.0014
NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604) 208 45.6 0.0014
XP_011523677 (OMIM: 607740) PREDICTED: ubiquitin c (1608) 208 45.6 0.0014
XP_011523676 (OMIM: 607740) PREDICTED: ubiquitin c (1615) 208 45.6 0.0014
XP_011523675 (OMIM: 607740) PREDICTED: ubiquitin c (1618) 208 45.6 0.0014
XP_011523674 (OMIM: 607740) PREDICTED: ubiquitin c (1620) 208 45.6 0.0014
XP_011523673 (OMIM: 607740) PREDICTED: ubiquitin c (1634) 208 45.6 0.0014
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786) 202 44.4 0.0015
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 203 44.6 0.0015
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 203 44.6 0.0016
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775) 200 44.1 0.0018
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031) 202 44.5 0.0019
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 200 44.1 0.002
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 200 44.1 0.002
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 200 44.1 0.0022
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 200 44.1 0.0022
>>NP_116052 (OMIM: 612492) ubiquitin carboxyl-terminal h (517 aa)
initn: 3558 init1: 3558 opt: 3558 Z-score: 3131.4 bits: 589.0 E(85289): 1.1e-167
Smith-Waterman score: 3558; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)
10 20 30 40 50 60
pF1KE3 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
430 440 450 460 470 480
490 500 510
pF1KE3 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
:::::::::::::::::::::::::::::::::::::
NP_116 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
490 500 510
>>XP_005254019 (OMIM: 612492) PREDICTED: ubiquitin carbo (516 aa)
initn: 2274 init1: 2274 opt: 3539 Z-score: 3114.8 bits: 585.9 E(85289): 9.4e-167
Smith-Waterman score: 3539; 99.8% identity (99.8% similar) in 517 aa overlap (1-517:1-516)
10 20 30 40 50 60
pF1KE3 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRVTHLFDVHSLEQ-SEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
190 200 210 220 230
250 260 270 280 290 300
pF1KE3 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE3 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE3 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
420 430 440 450 460 470
490 500 510
pF1KE3 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
:::::::::::::::::::::::::::::::::::::
XP_005 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
480 490 500 510
>>NP_001288104 (OMIM: 612492) ubiquitin carboxyl-termina (486 aa)
initn: 3373 init1: 3373 opt: 3373 Z-score: 2969.5 bits: 559.0 E(85289): 1.2e-158
Smith-Waterman score: 3373; 100.0% identity (100.0% similar) in 486 aa overlap (32-517:1-486)
10 20 30 40 50 60
pF1KE3 LSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERKK
::::::::::::::::::::::::::::::
NP_001 MKNWGVIGGIAAALAAGIYVIWGPITERKK
10 20 30
70 80 90 100 110 120
pF1KE3 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE3 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV
400 410 420 430 440 450
490 500 510
pF1KE3 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
::::::::::::::::::::::::::::::::::::
NP_001 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
460 470 480
>>XP_006719716 (OMIM: 612492) PREDICTED: ubiquitin carbo (486 aa)
initn: 3373 init1: 3373 opt: 3373 Z-score: 2969.5 bits: 559.0 E(85289): 1.2e-158
Smith-Waterman score: 3373; 100.0% identity (100.0% similar) in 486 aa overlap (32-517:1-486)
10 20 30 40 50 60
pF1KE3 LSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERKK
::::::::::::::::::::::::::::::
XP_006 MKNWGVIGGIAAALAAGIYVIWGPITERKK
10 20 30
70 80 90 100 110 120
pF1KE3 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE3 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE3 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV
400 410 420 430 440 450
490 500 510
pF1KE3 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
::::::::::::::::::::::::::::::::::::
XP_006 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
460 470 480
>>XP_005254022 (OMIM: 612492) PREDICTED: ubiquitin carbo (456 aa)
initn: 2740 init1: 2740 opt: 2740 Z-score: 2414.7 bits: 456.2 E(85289): 9.3e-128
Smith-Waterman score: 3010; 88.2% identity (88.2% similar) in 517 aa overlap (1-517:1-456)
10 20 30 40 50 60
pF1KE3 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
::::
XP_005 KRRK--------------------------------------------------------
130 140 150 160 170 180
pF1KE3 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 -----ALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
70 80 90 100 110
190 200 210 220 230 240
pF1KE3 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
120 130 140 150 160 170
250 260 270 280 290 300
pF1KE3 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
180 190 200 210 220 230
310 320 330 340 350 360
pF1KE3 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
240 250 260 270 280 290
370 380 390 400 410 420
pF1KE3 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
300 310 320 330 340 350
430 440 450 460 470 480
pF1KE3 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
360 370 380 390 400 410
490 500 510
pF1KE3 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
:::::::::::::::::::::::::::::::::::::
XP_005 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
420 430 440 450
>>XP_016875537 (OMIM: 612492) PREDICTED: ubiquitin carbo (554 aa)
initn: 2752 init1: 2702 opt: 2703 Z-score: 2381.0 bits: 450.3 E(85289): 7e-126
Smith-Waterman score: 3438; 93.3% identity (93.3% similar) in 549 aa overlap (1-512:1-549)
10 20 30 40 50 60
pF1KE3 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
310 320 330 340 350 360
370 380
pF1KE3 HKPSQHNPKLNKNPGPTLELQDGPGAPTP-------------------------------
:::::::::::::::::::::::::::::
XP_016 HKPSQHNPKLNKNPGPTLELQDGPGAPTPGVCARGADAAGIFSTEKSSLASPPSGSLMTG
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE3 ------VLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQGLYNVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVV
430 440 450 460 470 480
450 460 470 480 490 500
pF1KE3 HHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVL
490 500 510 520 530 540
510
pF1KE3 SRMQHQSQECKSEE
:::::::::
XP_016 SRMQHQSQECKSEE
550
>>XP_016875538 (OMIM: 612492) PREDICTED: ubiquitin carbo (553 aa)
initn: 2141 init1: 1418 opt: 2684 Z-score: 2364.3 bits: 447.2 E(85289): 5.9e-125
Smith-Waterman score: 3419; 93.1% identity (93.1% similar) in 549 aa overlap (1-512:1-548)
10 20 30 40 50 60
pF1KE3 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRVTHLFDVHSLEQ-SEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
190 200 210 220 230
250 260 270 280 290 300
pF1KE3 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
300 310 320 330 340 350
370 380
pF1KE3 HKPSQHNPKLNKNPGPTLELQDGPGAPTP-------------------------------
:::::::::::::::::::::::::::::
XP_016 HKPSQHNPKLNKNPGPTLELQDGPGAPTPGVCARGADAAGIFSTEKSSLASPPSGSLMTG
360 370 380 390 400 410
390 400 410 420 430 440
pF1KE3 ------VLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQGLYNVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVV
420 430 440 450 460 470
450 460 470 480 490 500
pF1KE3 HHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVL
480 490 500 510 520 530
510
pF1KE3 SRMQHQSQECKSEE
:::::::::
XP_016 SRMQHQSQECKSEE
540 550
>>XP_011537196 (OMIM: 612492) PREDICTED: ubiquitin carbo (368 aa)
initn: 2274 init1: 2274 opt: 2566 Z-score: 2263.4 bits: 427.9 E(85289): 2.5e-119
Smith-Waterman score: 2566; 99.7% identity (99.7% similar) in 369 aa overlap (149-517:1-368)
120 130 140 150 160 170
pF1KE3 TLLHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERD
::::::::::::::::::::::::::::::
XP_011 MYRWQISSFEEQDAHELFHVITSSLEDERD
10 20 30
180 190 200 210 220 230
pF1KE3 RQPRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCE
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
XP_011 RQPRVTHLFDVHSLEQ-SEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCE
40 50 60 70 80
240 250 260 270 280 290
pF1KE3 HQSPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HQSPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNG
90 100 110 120 130 140
300 310 320 330 340 350
pF1KE3 EKVEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKVEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHL
150 160 170 180 190 200
360 370 380 390 400 410
pF1KE3 LGHKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGHKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAP
210 220 230 240 250 260
420 430 440 450 460 470
pF1KE3 MPFPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPFPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSD
270 280 290 300 310 320
480 490 500 510
pF1KE3 DTVRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
:::::::::::::::::::::::::::::::::::::::
XP_011 DTVRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
330 340 350 360
>>XP_016875541 (OMIM: 612492) PREDICTED: ubiquitin carbo (523 aa)
initn: 2567 init1: 2517 opt: 2518 Z-score: 2219.0 bits: 420.2 E(85289): 7.3e-117
Smith-Waterman score: 3253; 92.9% identity (92.9% similar) in 518 aa overlap (32-512:1-518)
10 20 30 40 50 60
pF1KE3 LSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERKK
::::::::::::::::::::::::::::::
XP_016 MKNWGVIGGIAAALAAGIYVIWGPITERKK
10 20 30
70 80 90 100 110 120
pF1KE3 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
280 290 300 310 320 330
370 380
pF1KE3 KPSQHNPKLNKNPGPTLELQDGPGAPTP--------------------------------
::::::::::::::::::::::::::::
XP_016 KPSQHNPKLNKNPGPTLELQDGPGAPTPGVCARGADAAGIFSTEKSSLASPPSGSLMTGA
340 350 360 370 380 390
390 400 410 420 430 440
pF1KE3 -----VLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVVH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGLYNVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVVH
400 410 420 430 440 450
450 460 470 480 490 500
pF1KE3 HGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVLS
460 470 480 490 500 510
510
pF1KE3 RMQHQSQECKSEE
::::::::
XP_016 RMQHQSQECKSEE
520
>>XP_016875540 (OMIM: 612492) PREDICTED: ubiquitin carbo (523 aa)
initn: 2567 init1: 2517 opt: 2518 Z-score: 2219.0 bits: 420.2 E(85289): 7.3e-117
Smith-Waterman score: 3253; 92.9% identity (92.9% similar) in 518 aa overlap (32-512:1-518)
10 20 30 40 50 60
pF1KE3 LSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERKK
::::::::::::::::::::::::::::::
XP_016 MKNWGVIGGIAAALAAGIYVIWGPITERKK
10 20 30
70 80 90 100 110 120
pF1KE3 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE3 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
280 290 300 310 320 330
370 380
pF1KE3 KPSQHNPKLNKNPGPTLELQDGPGAPTP--------------------------------
::::::::::::::::::::::::::::
XP_016 KPSQHNPKLNKNPGPTLELQDGPGAPTPGVCARGADAAGIFSTEKSSLASPPSGSLMTGA
340 350 360 370 380 390
390 400 410 420 430 440
pF1KE3 -----VLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVVH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGLYNVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPFPLPVVPDYSSSTYLFRLMAVVVH
400 410 420 430 440 450
450 460 470 480 490 500
pF1KE3 HGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTVRKASLQEVLSSSAYLLFYERVLS
460 470 480 490 500 510
510
pF1KE3 RMQHQSQECKSEE
::::::::
XP_016 RMQHQSQECKSEE
520
517 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:37:48 2016 done: Sat Nov 5 23:37:50 2016
Total Scan time: 10.760 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]