Result of FASTA (ccds) for
pFN21AE3216
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3216, 493 aa
1>>>pF1KE3216 493 - 493 aa - 493 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9922+/-0.000894; mu= 2.6737+/- 0.055
mean_var=168.0522+/-33.905, 0's: 0 Z-trim(112.5): 11 B-trim: 191 in 1/52
Lambda= 0.098936
statistics sampled from 13265 (13274) to 13265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.408), width: 16
Scan time: 3.560
The best scores are: opt bits E(32554)
CCDS11881.1 CABYR gene_id:26256|Hs108|chr18 ( 493) 3129 458.3 8.7e-129
CCDS11882.1 CABYR gene_id:26256|Hs108|chr18 ( 475) 2715 399.2 5.2e-111
CCDS77166.1 CABYR gene_id:26256|Hs108|chr18 ( 395) 2496 367.9 1.1e-101
CCDS45840.1 CABYR gene_id:26256|Hs108|chr18 ( 221) 1178 179.7 2.9e-45
CCDS42420.1 CABYR gene_id:26256|Hs108|chr18 ( 379) 1173 179.1 7.6e-45
CCDS11883.1 CABYR gene_id:26256|Hs108|chr18 ( 281) 540 88.7 9.2e-18
>>CCDS11881.1 CABYR gene_id:26256|Hs108|chr18 (493 aa)
initn: 3129 init1: 3129 opt: 3129 Z-score: 2425.6 bits: 458.3 E(32554): 8.7e-129
Smith-Waterman score: 3129; 100.0% identity (100.0% similar) in 493 aa overlap (1-493:1-493)
10 20 30 40 50 60
pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT
430 440 450 460 470 480
490
pF1KE3 APEIEPEGESTAE
:::::::::::::
CCDS11 APEIEPEGESTAE
490
>>CCDS11882.1 CABYR gene_id:26256|Hs108|chr18 (475 aa)
initn: 2715 init1: 2715 opt: 2715 Z-score: 2106.5 bits: 399.2 E(32554): 5.2e-111
Smith-Waterman score: 2965; 96.3% identity (96.3% similar) in 493 aa overlap (1-493:1-475)
10 20 30 40 50 60
pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYR------------
10 20 30 40
70 80 90 100 110 120
pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ------VEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VHVDLGSQPKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PVTEGVVYIEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSV
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE3 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ESVKLAQLEENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLE
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE3 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VEITSIVSDNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLT
410 420 430 440 450 460
490
pF1KE3 APEIEPEGESTAE
:::::::::::::
CCDS11 APEIEPEGESTAE
470
>>CCDS77166.1 CABYR gene_id:26256|Hs108|chr18 (395 aa)
initn: 2496 init1: 2496 opt: 2496 Z-score: 1938.9 bits: 367.9 E(32554): 1.1e-101
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 395 aa overlap (99-493:1-395)
70 80 90 100 110 120
pF1KE3 KWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTTQFPSVYAV
::::::::::::::::::::::::::::::
CCDS77 MEKSTDTDEDNVTRTEYSDKTTQFPSVYAV
10 20 30
130 140 150 160 170 180
pF1KE3 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHS
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE3 DQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQ
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE3 PKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDVPVTEGVVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PKENEAEPSTASSVPLQDEQEPPAYDQAPEVTLQADIEVMSTVHISSVYNDVPVTEGVVY
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE3 IEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSVESVKLAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IEQLPEQIVIPFTDQVACLKENEQSKENEQSPRVSPKSVVEKTTSGMSKKSVESVKLAQL
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE3 EENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLEVEITSIVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EENAKYSSVYMEAEATALLSDTSLKGQPEVPAQLLDAEGAIKIGSEKSLHLEVEITSIVS
280 290 300 310 320 330
430 440 450 460 470 480
pF1KE3 DNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLTAPEIEPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DNTGQEESGENSVPQEMEGKPVLSGEAAEAVHSGTSVKSSSGPFPPAPEGLTAPEIEPEG
340 350 360 370 380 390
490
pF1KE3 ESTAE
:::::
CCDS77 ESTAE
>>CCDS45840.1 CABYR gene_id:26256|Hs108|chr18 (221 aa)
initn: 1210 init1: 1178 opt: 1178 Z-score: 926.2 bits: 179.7 E(32554): 2.9e-45
Smith-Waterman score: 1178; 95.3% identity (97.4% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS
:.. : ..:
CCDS45 EDVAKKSSGSGDKCAPFGSYGIAGEVTVTTAHKRRKAETEN
190 200 210 220
>>CCDS42420.1 CABYR gene_id:26256|Hs108|chr18 (379 aa)
initn: 1199 init1: 1173 opt: 1173 Z-score: 918.6 bits: 179.1 E(32554): 7.6e-45
Smith-Waterman score: 1173; 97.8% identity (99.5% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KE3 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MISSKPRLVVPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKDLVK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QFHQIKVEKWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QFPSVYAVPGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQML
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GKVSSIHSDQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTS
. ..:
CCDS42 AMATSERGQPPPCSNMWTLYCLTDKNQQGHPSPPPAPGPFPQATLYLPNPKDPQFQQHPP
190 200 210 220 230 240
>>CCDS11883.1 CABYR gene_id:26256|Hs108|chr18 (281 aa)
initn: 566 init1: 540 opt: 540 Z-score: 432.4 bits: 88.7 E(32554): 9.2e-18
Smith-Waterman score: 540; 95.4% identity (98.9% similar) in 87 aa overlap (99-185:1-87)
70 80 90 100 110 120
pF1KE3 KWSEGTTPQKKLECLKEPGKTSVESKVPTQMEKSTDTDEDNVTRTEYSDKTTQFPSVYAV
::::::::::::::::::::::::::::::
CCDS11 MEKSTDTDEDNVTRTEYSDKTTQFPSVYAV
10 20 30
130 140 150 160 170 180
pF1KE3 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLGKVSSIHS
::::::::::::::::::::::::::::::::::::::::::::::::::::. ..:
CCDS11 PGTEQTEAVGGLSSKPATPKTTTPPSSPPPTAVSPEFAYVPADPAQLAAQMLAMATSERG
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE3 DQSDVLMVDVATSMPVVIKEVPSSEAAEDVMVAAPLVCSGKVLEVQVVNQTSVHVDLGSQ
CCDS11 QPPPCSNMWTLYCLTDKNQQGHPSPPPAPGPFPQATLYLPNPKDPQFQQHPPKVTFPTYV
100 110 120 130 140 150
493 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:58:14 2016 done: Sun Nov 6 05:58:14 2016
Total Scan time: 3.560 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]