FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3213, 491 aa
  1>>>pF1KE3213 491 - 491 aa - 491 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1880+/-0.000897; mu= 13.8646+/- 0.054
 mean_var=78.8317+/-16.178, 0's: 0 Z-trim(107.3): 8  B-trim: 187 in 1/51
 Lambda= 0.144452
 statistics sampled from 9485 (9490) to 9485 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.292), width:  16
 Scan time:  3.250

The best scores are:                                      opt bits E(32554)
CCDS6699.1 IPPK gene_id:64768|Hs108|chr9           ( 491) 3346 706.9 1.2e-203


>>CCDS6699.1 IPPK gene_id:64768|Hs108|chr9                (491 aa)
 initn: 3346 init1: 3346 opt: 3346  Z-score: 3769.4  bits: 706.9 E(32554): 1.2e-203
Smith-Waterman score: 3346; 100.0% identity (100.0% similar) in 491 aa overlap (1-491:1-491)

               10        20        30        40        50        60
pF1KE3 MEEGKMDENEWGYHGEGNKSLVVAHAQRCVVLRFLKFPPNRKKTSEEIFQHLQNIVDFGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MEEGKMDENEWGYHGEGNKSLVVAHAQRCVVLRFLKFPPNRKKTSEEIFQHLQNIVDFGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 NVMKEFLGENYVHYGEVVQLPLEFVKQLCLKIQSERPESRCDKDLDTLSGYAMCLPNLTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NVMKEFLGENYVHYGEVVQLPLEFVKQLCLKIQSERPESRCDKDLDTLSGYAMCLPNLTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LQTYRFAEHRPILCVEIKPKCGFIPFSSDVTHEMKHKVCRYCMHQHLKVATGKWKQISKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LQTYRFAEHRPILCVEIKPKCGFIPFSSDVTHEMKHKVCRYCMHQHLKVATGKWKQISKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 CPLDLYSGNKQRMHFALKSLLQEAQNNLKIFKNGELIYGCKDARSPVADWSELAHHLKPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 CPLDLYSGNKQRMHFALKSLLQEAQNNLKIFKNGELIYGCKDARSPVADWSELAHHLKPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 FFPSNGLASGPHCTRAVIRELVHVITRVLLSGSDKGRAGTLSPGLGPQGPRVCEASPFSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FFPSNGLASGPHCTRAVIRELVHVITRVLLSGSDKGRAGTLSPGLGPQGPRVCEASPFSR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SLRCQGKNTPERSGLPKGCLLYKTLQVQMLDLLDIEGLYPLYNRVERYLEEFPEERKTLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SLRCQGKNTPERSGLPKGCLLYKTLQVQMLDLLDIEGLYPLYNRVERYLEEFPEERKTLQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 IDGPYDEAFYQKLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQDASSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IDGPYDEAFYQKLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQDASSDQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 RPVVPSSRSRFAFSVSVLDLDLKPYESIPHQYKLDGKIVNYYSKTVRAKDNAVMSTRFKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RPVVPSSRSRFAFSVSVLDLDLKPYESIPHQYKLDGKIVNYYSKTVRAKDNAVMSTRFKE
              430       440       450       460       470       480

              490 
pF1KE3 SEDCTLVLHKV
       :::::::::::
CCDS66 SEDCTLVLHKV
              490 




491 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:45:06 2016 done: Sun Nov  6 15:45:07 2016
 Total Scan time:  3.250 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]