Result of FASTA (omim) for
pFN21AE3208
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3208, 357 aa
1>>>pF1KE3208 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6824+/-0.000343; mu= 13.2244+/- 0.021
mean_var=204.4089+/-43.391, 0's: 0 Z-trim(121.0): 165 B-trim: 1617 in 1/56
Lambda= 0.089707
statistics sampled from 36916 (37109) to 36916 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.435), width: 16
Scan time: 8.680
The best scores are: opt bits E(85289)
NP_001128327 (OMIM: 606123) E3 ubiquitin-protein l ( 343) 2005 271.7 1.7e-72
NP_057186 (OMIM: 606123) E3 ubiquitin-protein liga ( 477) 2003 271.6 2.5e-72
XP_011542512 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 2003 271.6 2.5e-72
XP_006711842 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 2003 271.6 2.5e-72
NP_001020111 (OMIM: 606123) E3 ubiquitin-protein l ( 477) 2003 271.6 2.5e-72
XP_011542511 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 477) 2003 271.6 2.5e-72
XP_011542513 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 450) 1824 248.4 2.3e-65
XP_016856907 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 262) 1758 239.5 6.2e-63
XP_016856908 (OMIM: 606123) PREDICTED: E3 ubiquiti ( 262) 1758 239.5 6.2e-63
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 889 127.4 6.3e-29
NP_006501 (OMIM: 602165) zinc finger protein RFP [ ( 513) 678 100.2 1.1e-20
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 672 99.3 1.8e-20
NP_742013 (OMIM: 605700) E3 ubiquitin-protein liga ( 488) 663 98.2 4.1e-20
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 653 96.9 1e-19
NP_003132 (OMIM: 109092) E3 ubiquitin-protein liga ( 475) 590 88.7 2.8e-17
XP_016873951 (OMIM: 608487) PREDICTED: tripartite ( 300) 583 87.5 4e-17
XP_005253241 (OMIM: 608487) PREDICTED: tripartite ( 326) 583 87.6 4.2e-17
NP_149084 (OMIM: 608487) tripartite motif-containi ( 326) 583 87.6 4.2e-17
NP_149083 (OMIM: 608487) tripartite motif-containi ( 347) 583 87.6 4.4e-17
XP_005253240 (OMIM: 608487) PREDICTED: tripartite ( 493) 583 87.8 5.4e-17
NP_149023 (OMIM: 608487) tripartite motif-containi ( 493) 583 87.8 5.4e-17
NP_477514 (OMIM: 607564) tripartite motif-containi ( 488) 560 84.9 4.3e-16
NP_001003818 (OMIM: 607564) tripartite motif-conta ( 516) 560 84.9 4.4e-16
XP_011518729 (OMIM: 608487) PREDICTED: tripartite ( 271) 532 80.9 3.7e-15
NP_963921 (OMIM: 610530) E3 ubiquitin-protein liga ( 518) 530 81.0 6.5e-15
XP_006714995 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 520) 530 81.0 6.5e-15
XP_006714994 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 525) 530 81.0 6.6e-15
XP_006714993 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 541) 530 81.0 6.7e-15
XP_006714992 (OMIM: 610530) PREDICTED: E3 ubiquiti ( 543) 530 81.0 6.7e-15
NP_291027 (OMIM: 610530) E3 ubiquitin-protein liga ( 630) 530 81.1 7.3e-15
XP_016873952 (OMIM: 608487) PREDICTED: tripartite ( 265) 520 79.3 1.1e-14
XP_006718421 (OMIM: 608487) PREDICTED: tripartite ( 265) 520 79.3 1.1e-14
XP_011518728 (OMIM: 608487) PREDICTED: tripartite ( 310) 520 79.4 1.2e-14
XP_016873950 (OMIM: 608487) PREDICTED: tripartite ( 310) 520 79.4 1.2e-14
NP_001003827 (OMIM: 605684) tripartite motif-conta ( 488) 522 79.9 1.3e-14
NP_067629 (OMIM: 605684) tripartite motif-containi ( 488) 522 79.9 1.3e-14
XP_016873949 (OMIM: 608487) PREDICTED: tripartite ( 314) 511 78.3 2.6e-14
NP_569074 (OMIM: 605684) tripartite motif-containi ( 270) 508 77.8 3.2e-14
NP_060543 (OMIM: 613184) E3 ubiquitin-protein liga ( 485) 507 78.0 4.9e-14
NP_006065 (OMIM: 606559) E3 ubiquitin-protein liga ( 498) 506 77.9 5.5e-14
NP_001186502 (OMIM: 606559) E3 ubiquitin-protein l ( 494) 488 75.5 2.7e-13
XP_011512567 (OMIM: 609316) PREDICTED: E3 ubiquiti ( 421) 474 73.6 8.7e-13
NP_008959 (OMIM: 609316) E3 ubiquitin-protein liga ( 425) 474 73.6 8.8e-13
XP_005249431 (OMIM: 600830) PREDICTED: tripartite ( 539) 471 73.4 1.3e-12
NP_001229712 (OMIM: 600830) tripartite motif-conta ( 539) 471 73.4 1.3e-12
XP_005249433 (OMIM: 600830) PREDICTED: tripartite ( 539) 471 73.4 1.3e-12
XP_005249432 (OMIM: 600830) PREDICTED: tripartite ( 539) 471 73.4 1.3e-12
NP_003440 (OMIM: 600830) tripartite motif-containi ( 539) 471 73.4 1.3e-12
XP_006715243 (OMIM: 600830) PREDICTED: tripartite ( 539) 471 73.4 1.3e-12
XP_005249435 (OMIM: 600830) PREDICTED: tripartite ( 539) 471 73.4 1.3e-12
>>NP_001128327 (OMIM: 606123) E3 ubiquitin-protein ligas (343 aa)
initn: 1997 init1: 1997 opt: 2005 Z-score: 1422.3 bits: 271.7 E(85289): 1.7e-72
Smith-Waterman score: 2009; 91.6% identity (92.8% similar) in 332 aa overlap (1-322:1-331)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWC-
:::::::::::::::::::::::::::::::::::::::::::::::::::::: . :
NP_001 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLGK-WAP
250 260 270 280 290
300 310 320 330 340 350
pF1KE3 ---------LMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLG
: : : .: . :.::::
NP_001 RARTSDPGSLGDAPLYPLASEATNGGGSTSALPGDGHWLFTVPS
300 310 320 330 340
pF1KE3 GTTGRWA
>>NP_057186 (OMIM: 606123) E3 ubiquitin-protein ligase T (477 aa)
initn: 2035 init1: 2003 opt: 2003 Z-score: 1419.4 bits: 271.6 E(85289): 2.5e-72
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLEDVVPD
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 MPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
NP_057 ATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGRHYWEVGMNIT
310 320 330 340 350 360
>>XP_011542512 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (477 aa)
initn: 2035 init1: 2003 opt: 2003 Z-score: 1419.4 bits: 271.6 E(85289): 2.5e-72
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLEDVVPD
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 MPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
XP_011 ATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGRHYWEVGMNIT
310 320 330 340 350 360
>>XP_006711842 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (477 aa)
initn: 2035 init1: 2003 opt: 2003 Z-score: 1419.4 bits: 271.6 E(85289): 2.5e-72
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLEDVVPD
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 MPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
XP_006 ATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGRHYWEVGMNIT
310 320 330 340 350 360
>>NP_001020111 (OMIM: 606123) E3 ubiquitin-protein ligas (477 aa)
initn: 2035 init1: 2003 opt: 2003 Z-score: 1419.4 bits: 271.6 E(85289): 2.5e-72
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLEDVVPD
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 MPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
NP_001 ATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGRHYWEVGMNIT
310 320 330 340 350 360
>>XP_011542511 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (477 aa)
initn: 2035 init1: 2003 opt: 2003 Z-score: 1419.4 bits: 271.6 E(85289): 2.5e-72
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLEDVVPD
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 MPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
XP_011 ATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGRHYWEVGMNIT
310 320 330 340 350 360
>>XP_011542513 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (450 aa)
initn: 1856 init1: 1824 opt: 1824 Z-score: 1294.5 bits: 248.4 E(85289): 2.3e-65
Smith-Waterman score: 1824; 100.0% identity (100.0% similar) in 268 aa overlap (28-295:1-268)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
:::::::::::::::::::::::::::::::::
XP_011 MTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLEDVVPD
220 230 240 250 260 270
310 320 330 340 350
pF1KE3 MPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
XP_011 ATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGRHYWEVGMNIT
280 290 300 310 320 330
>>XP_016856907 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (262 aa)
initn: 1758 init1: 1758 opt: 1758 Z-score: 1250.8 bits: 239.5 E(85289): 6.2e-63
Smith-Waterman score: 1758; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
::::::::::::::::::::
XP_016 ERSTQGPLQMLQDMKEPLSRTT
250 260
>>XP_016856908 (OMIM: 606123) PREDICTED: E3 ubiquitin-pr (262 aa)
initn: 1758 init1: 1758 opt: 1758 Z-score: 1250.8 bits: 239.5 E(85289): 6.2e-63
Smith-Waterman score: 1758; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
::::::::::::::::::::
XP_016 ERSTQGPLQMLQDMKEPLSRTT
250 260
>>NP_660215 (OMIM: 607868) E3 ubiquitin-protein ligase T (468 aa)
initn: 760 init1: 425 opt: 889 Z-score: 640.3 bits: 127.4 E(85289): 6.3e-29
Smith-Waterman score: 889; 48.1% identity (70.2% similar) in 295 aa overlap (1-293:1-285)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
: : .:. .:::::::.:::::::::::: ::::::: ::. : :. .: .
NP_660 MAAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCW----GQP-----EGPY
10 20 30 40 50
70 80 90 100 110
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQ-HPGLQ-KQDLCQEHHEPLKLFCQKDQSPIC
::::::.:::::: ::: :.:.::::.. :: : .: :.::: :: . .:
NP_660 ACPECRELSPQRNLRPNRPLAKMAEMARRLHPPSPVPQGVCPAHREPLAAFCGDELRLLC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 VVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKV
..:..: :: ::: : ..:.. : :::...:.::.:. . .::. ... . :: :
NP_660 AACERSGEHWAHRVRPLQDAAEDLKAKLEKSLEHLRKQMQDALLFQAQADETCVLWQKMV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 KERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQ
. .:. .. :::.. :.::::.::: :: :: :. ::::..: : .:. : :. .
NP_660 ESQRQNVLGEFERLRRLLAEEEQQLLQRLEEEELEVLPRLREGAAHLGQQSAHLAELIAE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 LEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMW
:: : : .:::.:. : : ..:..: :::.: . :::::::: .:.:: :
NP_660 LEGRCQLPALGLLQDIKDALRRVQDVKLQPPEVVP-MELRTVCRVPGLVETLRRFRGDVT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 CLMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
NP_660 LDPDTANPELILSEDRRSVQRGDLRQALPDSPERFDPGPCVLGQERFTSGRHYWEVEVGD
300 310 320 330 340 350
357 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:35:31 2016 done: Mon Nov 7 17:35:32 2016
Total Scan time: 8.680 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]