Result of FASTA (ccds) for
pFN21AE3208
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3208, 357 aa
1>>>pF1KE3208 357 - 357 aa - 357 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4303+/-0.000842; mu= 8.4896+/- 0.050
mean_var=182.8484+/-38.427, 0's: 0 Z-trim(114.0): 101 B-trim: 570 in 1/51
Lambda= 0.094848
statistics sampled from 14491 (14600) to 14491 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.448), width: 16
Scan time: 2.060
The best scores are: opt bits E(32554)
CCDS44327.1 TRIM17 gene_id:51127|Hs108|chr1 ( 343) 2005 286.2 2.9e-77
CCDS1571.1 TRIM17 gene_id:51127|Hs108|chr1 ( 477) 2003 286.0 4.4e-77
CCDS31048.1 TRIM11 gene_id:81559|Hs108|chr1 ( 468) 889 133.6 3.4e-31
CCDS5678.1 TRIM4 gene_id:89122|Hs108|chr7 ( 474) 745 113.9 2.9e-25
CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 ( 513) 678 104.7 1.8e-22
CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 ( 488) 663 102.7 7e-22
CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 ( 503) 663 102.7 7.2e-22
CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 ( 518) 653 101.3 1.9e-21
CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 ( 486) 631 98.3 1.5e-20
CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 ( 475) 590 92.7 7e-19
CCDS31392.1 TRIM5 gene_id:85363|Hs108|chr11 ( 326) 583 91.5 1e-18
CCDS31394.1 TRIM5 gene_id:85363|Hs108|chr11 ( 347) 583 91.6 1.1e-18
CCDS31393.1 TRIM5 gene_id:85363|Hs108|chr11 ( 493) 583 91.7 1.4e-18
CCDS31388.1 TRIM34 gene_id:445372|Hs108|chr11 ( 842) 575 90.9 4.4e-18
CCDS31390.1 TRIM6 gene_id:117854|Hs108|chr11 ( 488) 560 88.6 1.2e-17
CCDS31389.1 TRIM6 gene_id:117854|Hs108|chr11 ( 516) 560 88.6 1.3e-17
CCDS3808.1 TRIM60 gene_id:166655|Hs108|chr4 ( 471) 547 86.8 4.1e-17
CCDS4568.1 TRIM38 gene_id:10475|Hs108|chr6 ( 465) 542 86.1 6.6e-17
CCDS2015.1 TRIM43 gene_id:129868|Hs108|chr2 ( 446) 539 85.7 8.5e-17
CCDS4465.1 TRIM41 gene_id:90933|Hs108|chr5 ( 518) 530 84.5 2.2e-16
CCDS4466.1 TRIM41 gene_id:90933|Hs108|chr5 ( 630) 530 84.6 2.5e-16
CCDS31391.1 TRIM34 gene_id:53840|Hs108|chr11 ( 488) 522 83.4 4.5e-16
CCDS73363.1 TRIM64 gene_id:120146|Hs108|chr11 ( 449) 508 81.4 1.6e-15
CCDS31356.1 TRIM68 gene_id:55128|Hs108|chr11 ( 485) 507 81.3 1.9e-15
CCDS41612.1 TRIM22 gene_id:10346|Hs108|chr11 ( 498) 506 81.2 2.1e-15
CCDS53693.1 TRIM64B gene_id:642446|Hs108|chr11 ( 449) 502 80.6 2.8e-15
CCDS34374.1 TRIM31 gene_id:11074|Hs108|chr6 ( 425) 474 76.7 3.9e-14
CCDS73287.1 TRIM64C gene_id:646754|Hs108|chr11 ( 450) 471 76.4 5.4e-14
CCDS60930.1 TRIM49D1 gene_id:399939|Hs108|chr11 ( 452) 470 76.2 5.9e-14
CCDS4678.1 TRIM26 gene_id:7726|Hs108|chr6 ( 539) 471 76.4 6.1e-14
CCDS3851.1 TRIML1 gene_id:339976|Hs108|chr4 ( 468) 469 76.1 6.7e-14
CCDS4676.1 TRIM10 gene_id:10107|Hs108|chr6 ( 395) 454 74.0 2.5e-13
CCDS34375.1 TRIM10 gene_id:10107|Hs108|chr6 ( 481) 454 74.1 2.8e-13
CCDS8287.1 TRIM49 gene_id:57093|Hs108|chr11 ( 452) 452 73.8 3.3e-13
CCDS53694.1 TRIM49C gene_id:642612|Hs108|chr11 ( 452) 452 73.8 3.3e-13
CCDS55762.1 TRIM49B gene_id:283116|Hs108|chr11 ( 452) 450 73.5 4e-13
CCDS60929.1 TRIM77 gene_id:390231|Hs108|chr11 ( 450) 403 67.1 3.4e-11
>>CCDS44327.1 TRIM17 gene_id:51127|Hs108|chr1 (343 aa)
initn: 1997 init1: 1997 opt: 2005 Z-score: 1500.6 bits: 286.2 E(32554): 2.9e-77
Smith-Waterman score: 2009; 91.6% identity (92.8% similar) in 332 aa overlap (1-322:1-331)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWC-
:::::::::::::::::::::::::::::::::::::::::::::::::::::: . :
CCDS44 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLGK-WAP
250 260 270 280 290
300 310 320 330 340 350
pF1KE3 ---------LMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLG
: : : .: . :.::::
CCDS44 RARTSDPGSLGDAPLYPLASEATNGGGSTSALPGDGHWLFTVPS
300 310 320 330 340
pF1KE3 GTTGRWA
>>CCDS1571.1 TRIM17 gene_id:51127|Hs108|chr1 (477 aa)
initn: 2035 init1: 2003 opt: 2003 Z-score: 1497.4 bits: 286.0 E(32554): 4.4e-77
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 PCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQDLCQEHHEPLKLFCQKDQSPICVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 CRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 RRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWCL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLEDVVPD
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 MPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
CCDS15 ATSAYPYLLLYESRQRRYLGSSPEGSGFCSKDRFVAYPCAVGQTAFSSGRHYWEVGMNIT
310 320 330 340 350 360
>>CCDS31048.1 TRIM11 gene_id:81559|Hs108|chr1 (468 aa)
initn: 760 init1: 425 opt: 889 Z-score: 673.6 bits: 133.6 E(32554): 3.4e-31
Smith-Waterman score: 889; 48.1% identity (70.2% similar) in 295 aa overlap (1-293:1-285)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
: : .:. .:::::::.:::::::::::: ::::::: ::. : :. .: .
CCDS31 MAAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCW----GQP-----EGPY
10 20 30 40 50
70 80 90 100 110
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQ-HPGLQ-KQDLCQEHHEPLKLFCQKDQSPIC
::::::.:::::: ::: :.:.::::.. :: : .: :.::: :: . .:
CCDS31 ACPECRELSPQRNLRPNRPLAKMAEMARRLHPPSPVPQGVCPAHREPLAAFCGDELRLLC
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 VVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKV
..:..: :: ::: : ..:.. : :::...:.::.:. . .::. ... . :: :
CCDS31 AACERSGEHWAHRVRPLQDAAEDLKAKLEKSLEHLRKQMQDALLFQAQADETCVLWQKMV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 KERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQ
. .:. .. :::.. :.::::.::: :: :: :. ::::..: : .:. : :. .
CCDS31 ESQRQNVLGEFERLRRLLAEEEQQLLQRLEEEELEVLPRLREGAAHLGQQSAHLAELIAE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 LEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMW
:: : : .:::.:. : : ..:..: :::.: . :::::::: .:.:: :
CCDS31 LEGRCQLPALGLLQDIKDALRRVQDVKLQPPEVVP-MELRTVCRVPGLVETLRRFRGDVT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 CLMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
CCDS31 LDPDTANPELILSEDRRSVQRGDLRQALPDSPERFDPGPCVLGQERFTSGRHYWEVEVGD
300 310 320 330 340 350
>>CCDS5678.1 TRIM4 gene_id:89122|Hs108|chr7 (474 aa)
initn: 724 init1: 452 opt: 745 Z-score: 567.1 bits: 113.9 E(32554): 2.9e-25
Smith-Waterman score: 745; 41.7% identity (67.7% similar) in 288 aa overlap (7-293:3-279)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
:. .::: :: :::::: ::: :::::::.:.. .: : : : :
CCDS56 MEAEDIQEELTCPICLDYFQDPVSIECGHNFCRGCLHRNW--APGG-------GPF
10 20 30 40
70 80 90 100 110
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQHP-GLQKQDLCQEHHEPLKLFCQKDQSPICV
::::::. : : :: :....: .:.. : :: .: :::.:::. :: :.:.
CCDS56 PCPECRHPSAPAALRPNWALARLTEKTQRRRLGPVPPGLCGRHWEPLRLFCEDDQRPVCL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 VCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQGKVK
:::::.::. : . : .:: ..:. :: .... : .. .. .:: : .. ..:. :.:
CCDS56 VCRESQEHQTHAMAPIDEAFESYREKLLKSQRNLVAKMKKVMHLQDVEVKNATQWKDKIK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 ERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELLLLQL
.: :: :: :.. .:::::. .:: :. ::::: ..: :.. :.. ::. :.:..
CCDS56 SQRMRISTEFSKLHNFLVEEEDLFLQRLNKEEEETKKKLNENTLKLNQTIASLKKLILEV
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 EERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLERMWC
:.: :..::. :: :.:.. .:. : .. .:::..: . :.:. :
CCDS56 GEKSQAPTLELLQNPKEVLTRSEIQDVNYSLEA--VKVKTVCQIPLMKEMLKRFQVAVNL
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE3 LMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGRWA
CCDS56 AEDTAHPKLVFSQEGRYVKNTASASSWPVFSSAWNYFAGWRNPQKTAFVERFQHLPCVLG
290 300 310 320 330 340
>>CCDS4654.1 TRIM27 gene_id:5987|Hs108|chr6 (513 aa)
initn: 700 init1: 431 opt: 678 Z-score: 517.1 bits: 104.7 E(32554): 1.8e-22
Smith-Waterman score: 678; 36.1% identity (63.3% similar) in 313 aa overlap (1-301:1-302)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
: . .:. ::.:.:: .::.::..:.: ::::.: ::. : : . .
CCDS46 MASGSVAECLQQETTCPVCLQYFAEPMMLDCGHNICCACLARCWGTA---------ETNV
10 20 30 40 50
70 80 90 100 110
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQ-------HPGLQKQDLCQEHHEPLKLFCQKD
::.::: :::.. ::: :..:.....: :: .. .:..:.:::::.:..:
CCDS46 SCPQCRETFPQRHMRPNRHLANVTQLVKQLRTERPSGPG-GEMGVCEKHREPLKLYCEED
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 QSPICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAE
: :::::: .::::: : ::: ::::.:.: ........:.. .:. ::. ::
CCDS46 QMPICVVCDRSREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 WQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLE
. .. .::.:: :::.. : :.: ::: :: . . . ... .. . :
CCDS46 LLSLTQMEREKIVWEFEQLYHSLKEHEYRLLARLEELDLAIYNSINGAITQFSCNISHLS
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 LLLLQLEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQ-----IE
:. ::::.. : ..:::. . ::: . . . : ..:: . . .. .: :
CCDS46 SLIAQLEEKQQQPTRELLQDIGDTLSRAERIRIPEPWITPPDLQEKI-HIFAQKCLFLTE
240 250 260 270 280
290 300 310 320 330 340
pF1KE3 VLRGFLERMWCLMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSP
:. : :.: :
CCDS46 SLKQFTEKMQSDMEKIQELREAQLYSVDVTLDPDTAYPSLILSDNLRQVRYSYLQQDLPD
290 300 310 320 330 340
>>CCDS34378.1 TRIM39 gene_id:56658|Hs108|chr6 (488 aa)
initn: 715 init1: 404 opt: 663 Z-score: 506.3 bits: 102.7 E(32554): 7e-22
Smith-Waterman score: 663; 33.8% identity (61.2% similar) in 358 aa overlap (10-356:23-365)
10 20 30 40
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKA
:: ::.::.::.:. .::. ::::::.::: ::
CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 RGKKGRRKRKGSFPCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQ----DLCQEHH
.: .:::: ::. : :.: ::: : ...:.:.: ..... .:: .::
CCDS34 -------ER--DFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHH
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 EPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNL
: :.::: .:: .:..: :. :: : :.: ..:.: :: ::.. .: :.... .
CCDS34 EALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 QAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVA
.. ::.. .: . :. ::..:. :::... : ::.: ::. :: ::.. .::::..:
CCDS34 KSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 CLDRQGHSLELLLLQLEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRV
: . ..: : ..: . :. ..::.:.: : . ..:... . ..
CCDS34 HLGDKRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNF
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 PGQIEVLRGFLERMWC--LMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVL
: : .:: .:... . : . . . : ... .. : :: ::
CCDS34 PRQYFALRKILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRL------RDLPDTPRR
300 310 320 330 340
350
pF1KE3 WARRPSPL---GGTTGR--WA
.. : : : :.:: :
CCDS34 FTFYPCVLATEGFTSGRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWN
350 360 370 380 390 400
>>CCDS78121.1 RPP21 gene_id:202658|Hs108|chr6 (503 aa)
initn: 737 init1: 404 opt: 663 Z-score: 506.1 bits: 102.7 E(32554): 7.2e-22
Smith-Waterman score: 663; 33.8% identity (61.2% similar) in 358 aa overlap (10-356:23-365)
10 20 30 40
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKA
:: ::.::.::.:. .::. ::::::.::: ::
CCDS78 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 RGKKGRRKRKGSFPCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQ----DLCQEHH
.: .:::: ::. : :.: ::: : ...:.:.: ..... .:: .::
CCDS78 -------ER--DFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHH
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 EPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNL
: :.::: .:: .:..: :. :: : :.: ..:.: :: ::.. .: :.... .
CCDS78 EALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 QAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVA
.. ::.. .: . :. ::..:. :::... : ::.: ::. :: ::.. .::::..:
CCDS78 KSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE3 CLDRQGHSLELLLLQLEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRV
: . ..: : ..: . :. ..::.:.: : . ..:... . ..
CCDS78 HLGDKRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKTMEVTSVSIELEKNFSNF
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE3 PGQIEVLRGFLERMWC--LMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVL
: : .:: .:... . : . . . : ... .. : :: ::
CCDS78 PRQYFALRKILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRL------RDLPDTPRR
300 310 320 330 340
350
pF1KE3 WARRPSPL---GGTTGR--WA
.. : : : :.:: :
CCDS78 FTFYPCVLATEGFTSGRHYWEVEAAHCVLAQDPENQALARFYCYTERTIAKRLVLRRDPS
350 360 370 380 390 400
>>CCDS34377.1 TRIM39 gene_id:56658|Hs108|chr6 (518 aa)
initn: 702 init1: 391 opt: 653 Z-score: 498.5 bits: 101.3 E(32554): 1.9e-21
Smith-Waterman score: 653; 38.1% identity (67.0% similar) in 270 aa overlap (10-269:23-283)
10 20 30 40
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKA
:: ::.::.::.:. .::. ::::::.::: ::
CCDS34 MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 RGKKGRRKRKGSFPCPECREMSPQRNLLPNRLLTKVAEMAQQHPGLQKQ----DLCQEHH
. .:::: ::. : :.: ::: : ...:.:.: ..... .:: .::
CCDS34 ---------ERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHH
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 EPLKLFCQKDQSPICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNL
: :.::: .:: .:..: :. :: : :.: ..:.: :: ::.. .: :.... .
CCDS34 EALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRC
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 QAREEQSLAEWQGKVKERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVA
.. ::.. .: . :. ::..:. :::... : ::.: ::. :: ::.. .::::..:
CCDS34 KSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAA
180 190 200 210 220 230
230 240 250 260 270
pF1KE3 CLDRQGHSLELLLLQLEERSTQGPLQMLQDMKEPLSRK------NNVSVQCPEVAPPTRP
: . ..: : ..: . :. ..::.:.: : .. ...:. ::
CCDS34 HLGDKRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKNIPRKFGGSLSTICPRDHKALLG
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE3 RTVCRVPGQIEVLRGFLERMWCLMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWL
CCDS34 LVKEINRCEKVKTMEVTSVSIELEKNFSNFPRQYFALRKILKQLIADVTLDPETAHPNLV
300 310 320 330 340 350
>>CCDS1636.1 TRIM58 gene_id:25893|Hs108|chr1 (486 aa)
initn: 604 init1: 359 opt: 631 Z-score: 482.6 bits: 98.3 E(32554): 1.5e-20
Smith-Waterman score: 631; 34.1% identity (61.7% similar) in 334 aa overlap (9-336:9-332)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
.:.:.: : .:::.. .:: . :::.:: ::. ::. : .: : .
CCDS16 MAWAPPGERLREDARCPVCLDFLQEPVSVDCGHSFCLRCISEFCEKSDGAQG-----GVY
10 20 30 40 50
70 80 90 100 110
pF1KE3 PCPECREMSPQRNLLPNRLLTKVAEMAQQ-----HPGLQKQDLCQEHHEPLKLFCQKDQS
::.:: .. ::: :. ..: ... :: .. : .: : :. ::..:..
CCDS16 ACPQCRGPFRPSGFRPNRQLAGLVESVRRLGLGAGPGARR---CARHGEDLSRFCEEDEA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQ
.: :: . ::: ::. : .::. .:..::. .: .:... . . .: .. . :.
CCDS16 ALCWVCDAGPEHRTHRTAPLQEAAGSYQVKLQMALELMRKELEDALTQEANVGKKTVIWK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 GKVKERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELL
::. .:.:. ::::: .:..:::: :. ::.::. : .::::: . : .:...:. :
CCDS16 EKVEMQRQRFRLEFEKHRGFLAQEEQRQLRRLEAEERATLQRLRESKSRLVQQSKALKEL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 LLQLEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLE
.:.:: . : .:. .. :::.. :. : : . .:.: .::. :.:: :
CCDS16 ADELQERCQRPALGLLEGVRGVLSRSKAVTRLEAE-NIPMELKTACCIPGRRELLRKFQV
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 RMWCLMPPPRTPTSSCMRAARGATSALRRRAV-GSAARTDLWLTPVLWARRPSPLGGTTG
. : : :. :.. .. : : .. : : :
CCDS16 DVK-LDPATAHPSLLLTADLRSVQDGEPWRDVPNNPERFDTWPCILGLQSFSSGRHYWEV
300 310 320 330 340 350
pF1KE3 RWA
CCDS16 LVGEGAEWGLGVCQDTLPRKGETTPSPENGVWALWLLKGNEYMVLASPSVPLLQLESPRC
360 370 380 390 400 410
>>CCDS44525.1 TRIM21 gene_id:6737|Hs108|chr11 (475 aa)
initn: 614 init1: 327 opt: 590 Z-score: 452.4 bits: 92.7 E(32554): 7e-19
Smith-Waterman score: 590; 37.6% identity (65.2% similar) in 287 aa overlap (10-291:10-283)
10 20 30 40 50 60
pF1KE3 MEAVELARKLQEEATCSICLDYFTDPVMTTCGHNFCRACIQLSWEKARGKKGRRKRKGSF
. ::.:: :::: :..:: :::.::. ::. :: : ::
CCDS44 MASAARLTMMWEEVTCPICLDPFVEPVSIECGHSFCQECISQV-----GKGG-----GSV
10 20 30 40 50
70 80 90 100 110
pF1KE3 PCPECREMSPQRNLLPNRLLTKVA----EMAQQ-HPGLQKQDLCQEHHEPLKLFCQKDQS
:: ::. .:: ::: :.... :..:. . : : . : : : :.:::.:: .
CCDS44 -CPVCRQRFLLKNLRPNRQLANMVNNLKEISQEAREGTQGER-CAVHGERLHLFCEKDGK
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 PICVVCRESREHRLHRVLPAEEAVQGYKLKLEEDMEYLREQITRTGNLQAREEQSLAEWQ
.: :: .::.:: : ..: :::.: :. ::. . ::.. . .:... . :.:.
CCDS44 ALCWVCAQSRKHRDHAMVPLEEAAQEYQEKLQVALGELRRKQELAEKLEVEIAIKRADWK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 GKVKERRERIVLEFEKMNLYLVEEEQRLLQALETEEEETASRLRESVACLDRQGHSLELL
:. .. :: :: ... .::::::: :: :: .:.: : :. : : .:...:. :
CCDS44 KTVETQKSRIHAEFVQQKNFLVEEEQRQLQELEKDEREQLRILGEKEAKLAQQSQALQEL
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 LLQLEERSTQGPLQMLQDMKEPLSRKNNVSVQCPEVAPPTRPRTVCRVPGQIEVLRGFLE
. .:..: .. :..::.. : :... ... ... : . :.::.::: ..::
CCDS44 ISELDRRCHSSALELLQEVIIVLERSESWNLKDLDITSP-ELRSVCHVPGLKKMLRTCAV
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE3 RMWCLMPPPRTPTSSCMRAARGATSALRRRAVGSAARTDLWLTPVLWARRPSPLGGTTGR
CCDS44 HITLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVD
290 300 310 320 330 340
357 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:35:30 2016 done: Mon Nov 7 17:35:31 2016
Total Scan time: 2.060 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]