Result of FASTA (omim) for
pFN21AE3201
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3201, 471 aa
1>>>pF1KE3201 471 - 471 aa - 471 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5015+/-0.000397; mu= 8.4967+/- 0.025
mean_var=199.7566+/-38.558, 0's: 0 Z-trim(118.0): 12 B-trim: 49 in 1/57
Lambda= 0.090745
statistics sampled from 30603 (30612) to 30603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.359), width: 16
Scan time: 9.400
The best scores are: opt bits E(85289)
NP_036307 (OMIM: 609089) F-box only protein 3 isof ( 471) 3238 436.8 6e-122
NP_208385 (OMIM: 609089) F-box only protein 3 isof ( 415) 2841 384.8 2.4e-106
XP_011518283 (OMIM: 609089) PREDICTED: F-box only ( 415) 2841 384.8 2.4e-106
XP_011518282 (OMIM: 609089) PREDICTED: F-box only ( 479) 2841 384.9 2.7e-106
XP_016873022 (OMIM: 609089) PREDICTED: F-box only ( 309) 2115 289.6 8.2e-78
XP_011518284 (OMIM: 609089) PREDICTED: F-box only ( 317) 1718 237.6 3.7e-62
>>NP_036307 (OMIM: 609089) F-box only protein 3 isoform (471 aa)
initn: 3238 init1: 3238 opt: 3238 Z-score: 2310.3 bits: 436.8 E(85289): 6e-122
Smith-Waterman score: 3238; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)
10 20 30 40 50 60
pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
370 380 390 400 410 420
430 440 450 460 470
pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
430 440 450 460 470
>>NP_208385 (OMIM: 609089) F-box only protein 3 isoform (415 aa)
initn: 2841 init1: 2841 opt: 2841 Z-score: 2030.1 bits: 384.8 E(85289): 2.4e-106
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)
10 20 30 40 50 60
pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_208 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_208 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_208 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_208 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_208 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_208 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_208 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLVS
370 380 390 400 410
430 440 450 460 470
pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
>>XP_011518283 (OMIM: 609089) PREDICTED: F-box only prot (415 aa)
initn: 2841 init1: 2841 opt: 2841 Z-score: 2030.1 bits: 384.8 E(85289): 2.4e-106
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)
10 20 30 40 50 60
pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLFW
370 380 390 400 410
430 440 450 460 470
pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
>>XP_011518282 (OMIM: 609089) PREDICTED: F-box only prot (479 aa)
initn: 2841 init1: 2841 opt: 2841 Z-score: 2029.3 bits: 384.9 E(85289): 2.7e-106
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)
10 20 30 40 50 60
pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLPRVLSFS
370 380 390 400 410 420
430 440 450 460 470
pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
XP_011 PGTCVFDTLSHHVRSPATMKPSCRRDHVETSHRDRGRHPGAPAVSDSRYLDHPARVPDM
430 440 450 460 470
>>XP_016873022 (OMIM: 609089) PREDICTED: F-box only prot (309 aa)
initn: 2115 init1: 2115 opt: 2115 Z-score: 1518.0 bits: 289.6 E(85289): 8.2e-78
Smith-Waterman score: 2115; 100.0% identity (100.0% similar) in 309 aa overlap (163-471:1-309)
140 150 160 170 180 190
pF1KE3 QIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKY
::::::::::::::::::::::::::::::
XP_016 MALSNHYRSEDLLDVDTAAGGFQQRQGLKY
10 20 30
200 210 220 230 240 250
pF1KE3 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE3 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI
100 110 120 130 140 150
320 330 340 350 360 370
pF1KE3 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEE
220 230 240 250 260 270
440 450 460 470
pF1KE3 EDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
:::::::::::::::::::::::::::::::::::::::
XP_016 EDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
280 290 300
>>XP_011518284 (OMIM: 609089) PREDICTED: F-box only prot (317 aa)
initn: 1718 init1: 1718 opt: 1718 Z-score: 1237.0 bits: 237.6 E(85289): 3.7e-62
Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 251 aa overlap (163-413:1-251)
140 150 160 170 180 190
pF1KE3 QIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTAAGGFQQRQGLKY
::::::::::::::::::::::::::::::
XP_011 MALSNHYRSEDLLDVDTAAGGFQQRQGLKY
10 20 30
200 210 220 230 240 250
pF1KE3 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFIIGATFTDWFTSY
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE3 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVHPPHYFFTYRIRI
100 110 120 130 140 150
320 330 340 350 360 370
pF1KE3 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRVYEYTSCTTFSTT
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEYEEMEEEEEEEEE
:::::::::::::::::::::::::::::::::::::::::
XP_011 SGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLPRVLSFSPGTCVFDTLSHH
220 230 240 250 260 270
440 450 460 470
pF1KE3 EDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
XP_011 VRSPATMKPSCRRDHVETSHRDRGRHPGAPAVSDSRYLDHPARVPDM
280 290 300 310
471 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:56:50 2016 done: Sun Nov 6 05:56:51 2016
Total Scan time: 9.400 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]