FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3201, 471 aa
  1>>>pF1KE3201 471 - 471 aa - 471 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0150+/-0.000991; mu= 5.0968+/- 0.059
 mean_var=170.7096+/-34.476, 0's: 0 Z-trim(110.7): 26  B-trim: 459 in 1/51
 Lambda= 0.098162
 statistics sampled from 11801 (11810) to 11801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.363), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS7887.1 FBXO3 gene_id:26273|Hs108|chr11         ( 471) 3238 470.9 1.3e-132
CCDS44566.1 FBXO3 gene_id:26273|Hs108|chr11        ( 415) 2841 414.6 9.6e-116


>>CCDS7887.1 FBXO3 gene_id:26273|Hs108|chr11              (471 aa)
 initn: 3238 init1: 3238 opt: 3238  Z-score: 2494.5  bits: 470.9 E(32554): 1.3e-132
Smith-Waterman score: 3238; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)

               10        20        30        40        50        60
pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
              370       380       390       400       410       420

              430       440       450       460       470 
pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF
              430       440       450       460       470 

>>CCDS44566.1 FBXO3 gene_id:26273|Hs108|chr11             (415 aa)
 initn: 2841 init1: 2841 opt: 2841  Z-score: 2191.4  bits: 414.6 E(32554): 9.6e-116
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)

               10        20        30        40        50        60
pF1KE3 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLEMGPDEY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS44 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLVS     
              370       380       390       400       410          

              430       440       450       460       470 
pF1KE3 EEMEEEEEEEEEEDEDDDSADMDESDEDDEEERRRRVFDVPIRRRRCSRLF




471 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:56:49 2016 done: Sun Nov  6 05:56:50 2016
 Total Scan time:  2.380 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]