FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3198, 165 aa
  1>>>pF1KE3198 165 - 165 aa - 165 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4402+/-0.000266; mu= 8.6190+/- 0.017
 mean_var=115.2209+/-22.991, 0's: 0 Z-trim(123.2): 4  B-trim: 246 in 2/53
 Lambda= 0.119484
 statistics sampled from 42567 (42580) to 42567 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.499), width:  16
 Scan time:  5.680

The best scores are:                                      opt bits E(85289)
NP_001092926 (OMIM: 607997) neuropeptide W preprop ( 165) 1140 205.9 2.4e-53
NP_683694 (OMIM: 607996) neuropeptide B preproprot ( 125)  173 39.1  0.0029


>>NP_001092926 (OMIM: 607997) neuropeptide W preproprote  (165 aa)
 initn: 1140 init1: 1140 opt: 1140  Z-score: 1078.8  bits: 205.9 E(85289): 2.4e-53
Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KE3 MAWRPGERGAPASRPRLALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAWRPGERGAPASRPRLALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LWRRALRAAAGPLARDTLSPEPAAREAPLLLPSWVQELWETRRRSSQAGIPVRAPRSPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LWRRALRAAAGPLARDTLSPEPAAREAPLLLPSWVQELWETRRRSSQAGIPVRAPRSPRA
               70        80        90       100       110       120

              130       140       150       160     
pF1KE3 PEPALEPESLDFSGAGQRLRRDVSRPAVDPAANRLGLPCLAPGPF
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEPALEPESLDFSGAGQRLRRDVSRPAVDPAANRLGLPCLAPGPF
              130       140       150       160     

>>NP_683694 (OMIM: 607996) neuropeptide B preproprotein   (125 aa)
 initn: 170 init1: 170 opt: 173  Z-score: 179.6  bits: 39.1 E(85289): 0.0029
Smith-Waterman score: 173; 53.1% identity (64.1% similar) in 64 aa overlap (18-81:11-73)

               10        20        30        40        50        60
pF1KE3 MAWRPGERGAPASRPRLALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPY
                        :: : ::: : :. :::: .:.   ..:::::::: :::::::
NP_683        MARSATLAAAALALCLLLAP-PGLAWYKPAAGHSSYSVGRAAGLLSGLRRSPY
                      10        20         30        40        50  

               70        80        90       100       110       120
pF1KE3 LWRRALRAAAGPLARDTLSPEPAAREAPLLLPSWVQELWETRRRSSQAGIPVRAPRSPRA
         :     .: : .    :::                                       
NP_683 ARRSQPYRGAEPPGGAGASPELQLHPRLRSLAVCVQDVAPNLQRCERLPDGRGTYQCKAN
             60        70        80        90       100       110  




165 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:47:40 2016 done: Tue Nov  8 04:47:41 2016
 Total Scan time:  5.680 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]