FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3193, 449 aa
  1>>>pF1KE3193 449 - 449 aa - 449 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7807+/-0.000663; mu= 16.6414+/- 0.040
 mean_var=90.1839+/-18.376, 0's: 0 Z-trim(112.7): 12  B-trim: 5 in 1/50
 Lambda= 0.135055
 statistics sampled from 13381 (13387) to 13381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.411), width:  16
 Scan time:  3.630

The best scores are:                                      opt bits E(32554)
CCDS42648.1 CMPK2 gene_id:129607|Hs108|chr2        ( 449) 3079 609.5 2.1e-174
CCDS58696.1 CMPK2 gene_id:129607|Hs108|chr2        ( 409) 2816 558.3 5.3e-159
CCDS58695.1 CMPK2 gene_id:129607|Hs108|chr2        ( 366) 2290 455.7 3.4e-128


>>CCDS42648.1 CMPK2 gene_id:129607|Hs108|chr2             (449 aa)
 initn: 3079 init1: 3079 opt: 3079  Z-score: 3244.5  bits: 609.5 E(32554): 2.1e-174
Smith-Waterman score: 3079; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)

               10        20        30        40        50        60
pF1KE3 MAFARRLLRGPLSGPLLGRRGVCAGAMAPPRRFVLELPDCTLAHFALGADAPGDADAPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAFARRLLRGPLSGPLLGRRGVCAGAMAPPRRFVLELPDCTLAHFALGADAPGDADAPDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RLAALLGPPERSYSLCVPVTPDAGCGARVRAARLHQRLLHQLRRGPFQRCQLLRLLCYCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RLAALLGPPERSYSLCVPVTPDAGCGARVRAARLHQRLLHQLRRGPFQRCQLLRLLCYCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGQAGGAQQGFLLRDPLDDPDTRQALLELLGACQEAPRPHLGEFEADPRGQLWQRLWEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GGQAGGAQQGFLLRDPLDDPDTRQALLELLGACQEAPRPHLGEFEADPRGQLWQRLWEVQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DGRRLQVGCAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DGRRLQVGCAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 DQCPKQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DQCPKQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYAIATEVSGGLQHLPPAHHPVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYAIATEVSGGLQHLPPAHHPVY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENP
              370       380       390       400       410       420

              430       440         
pF1KE3 GCHVVDASPSREKVLQTVLSLIQNSFSEP
       :::::::::::::::::::::::::::::
CCDS42 GCHVVDASPSREKVLQTVLSLIQNSFSEP
              430       440         

>>CCDS58696.1 CMPK2 gene_id:129607|Hs108|chr2             (409 aa)
 initn: 2816 init1: 2816 opt: 2816  Z-score: 2968.1  bits: 558.3 E(32554): 5.3e-159
Smith-Waterman score: 2816; 100.0% identity (100.0% similar) in 409 aa overlap (1-409:1-409)

               10        20        30        40        50        60
pF1KE3 MAFARRLLRGPLSGPLLGRRGVCAGAMAPPRRFVLELPDCTLAHFALGADAPGDADAPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAFARRLLRGPLSGPLLGRRGVCAGAMAPPRRFVLELPDCTLAHFALGADAPGDADAPDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RLAALLGPPERSYSLCVPVTPDAGCGARVRAARLHQRLLHQLRRGPFQRCQLLRLLCYCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RLAALLGPPERSYSLCVPVTPDAGCGARVRAARLHQRLLHQLRRGPFQRCQLLRLLCYCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGQAGGAQQGFLLRDPLDDPDTRQALLELLGACQEAPRPHLGEFEADPRGQLWQRLWEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GGQAGGAQQGFLLRDPLDDPDTRQALLELLGACQEAPRPHLGEFEADPRGQLWQRLWEVQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DGRRLQVGCAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DGRRLQVGCAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 DQCPKQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DQCPKQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYAIATEVSGGLQHLPPAHHPVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 IIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYAIATEVSGGLQHLPPAHHPVY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENP
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS58 QWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQK           
              370       380       390       400                    

              430       440         
pF1KE3 GCHVVDASPSREKVLQTVLSLIQNSFSEP

>>CCDS58695.1 CMPK2 gene_id:129607|Hs108|chr2             (366 aa)
 initn: 2290 init1: 2290 opt: 2290  Z-score: 2414.9  bits: 455.7 E(32554): 3.4e-128
Smith-Waterman score: 2290; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KE3 MAFARRLLRGPLSGPLLGRRGVCAGAMAPPRRFVLELPDCTLAHFALGADAPGDADAPDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAFARRLLRGPLSGPLLGRRGVCAGAMAPPRRFVLELPDCTLAHFALGADAPGDADAPDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RLAALLGPPERSYSLCVPVTPDAGCGARVRAARLHQRLLHQLRRGPFQRCQLLRLLCYCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RLAALLGPPERSYSLCVPVTPDAGCGARVRAARLHQRLLHQLRRGPFQRCQLLRLLCYCP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGQAGGAQQGFLLRDPLDDPDTRQALLELLGACQEAPRPHLGEFEADPRGQLWQRLWEVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GGQAGGAQQGFLLRDPLDDPDTRQALLELLGACQEAPRPHLGEFEADPRGQLWQRLWEVQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 DGRRLQVGCAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DGRRLQVGCAQVVPVPEPPLHPVVPDLPSSVVFPDREAARAVLEECTSFIPEARAVLDLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 DQCPKQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DQCPKQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYAIATEVSGGLQHLPPAHHPVY
       :::::::::::::::::::::::::::::::                             
CCDS58 IIRRAFYSLGNYIVASEIAKESAKSPVIVDRSQLGGTLYHPSLHLLGSEVCGTGILDSSH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 QWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRMENP
                                                                   
CCDS58 SSQGLE                                                      
                                                                   




449 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 11:02:35 2016 done: Sun Nov  6 11:02:36 2016
 Total Scan time:  3.630 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]