FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3188, 432 aa
  1>>>pF1KE3188 432 - 432 aa - 432 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7385+/-0.000905; mu= 12.2486+/- 0.054
 mean_var=160.4594+/-34.331, 0's: 0 Z-trim(111.9): 132  B-trim: 479 in 1/53
 Lambda= 0.101249
 statistics sampled from 12597 (12750) to 12597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.392), width:  16
 Scan time:  3.470

The best scores are:                                      opt bits E(32554)
CCDS11262.1 RNF135 gene_id:84282|Hs108|chr17       ( 432) 2982 447.5 1.2e-125
CCDS54104.1 RNF135 gene_id:84282|Hs108|chr17       ( 286) 1558 239.3 3.6e-63
CCDS11263.1 RNF135 gene_id:84282|Hs108|chr17       ( 210) 1201 187.0 1.5e-47


>>CCDS11262.1 RNF135 gene_id:84282|Hs108|chr17            (432 aa)
 initn: 2982 init1: 2982 opt: 2982  Z-score: 2369.5  bits: 447.5 E(32554): 1.2e-125
Smith-Waterman score: 2982; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)

               10        20        30        40        50        60
pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 QVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQLSAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQLSAW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 HMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH
              370       380       390       400       410       420

              430  
pF1KE3 PGNYLIIKQVKV
       ::::::::::::
CCDS11 PGNYLIIKQVKV
              430  

>>CCDS54104.1 RNF135 gene_id:84282|Hs108|chr17            (286 aa)
 initn: 1558 init1: 1558 opt: 1558  Z-score: 1247.5  bits: 239.3 E(32554): 3.6e-63
Smith-Waterman score: 1558; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230)

               10        20        30        40        50        60
pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
       ::::::::::::::::::::::::::::::::::::::::::::::: ::          
CCDS54 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGSLLPRLECSGTIT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS
                                                                   
CCDS54 AASISQAQENSWKPRLPPHAHCLTRATLHSGELLGLLSGPSIQPLT              
              250       260       270       280                    

>>CCDS11263.1 RNF135 gene_id:84282|Hs108|chr17            (210 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 967.3  bits: 187.0 E(32554): 1.5e-47
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)

               10        20        30        40        50        60
pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS11 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
                                                                   
CCDS11 PPHAHCLTRATLHSGELLGLLSGPSIQPLT                              
              190       200       210                              




432 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:35:03 2016 done: Sat Nov  5 23:35:04 2016
 Total Scan time:  3.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]