FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3185, 425 aa
  1>>>pF1KE3185 425 - 425 aa - 425 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0047+/-0.000357; mu= 18.8568+/- 0.022
 mean_var=65.4173+/-12.595, 0's: 0 Z-trim(112.8): 44  B-trim: 0 in 0/53
 Lambda= 0.158573
 statistics sampled from 21864 (21900) to 21864 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.257), width:  16
 Scan time:  8.660

The best scores are:                                      opt bits E(85289)
NP_006822 (OMIM: 608757,615803) polyribonucleotide ( 425) 2801 649.8 3.8e-186
NP_001136069 (OMIM: 608757,615803) polyribonucleot ( 361) 1502 352.6 9.5e-97


>>NP_006822 (OMIM: 608757,615803) polyribonucleotide 5'-  (425 aa)
 initn: 2801 init1: 2801 opt: 2801  Z-score: 3463.0  bits: 649.8 E(85289): 3.8e-186
Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)

               10        20        30        40        50        60
pF1KE3 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
              370       380       390       400       410       420

            
pF1KE3 FMDLK
       :::::
NP_006 FMDLK
            

>>NP_001136069 (OMIM: 608757,615803) polyribonucleotide   (361 aa)
 initn: 2369 init1: 1492 opt: 1502  Z-score: 1857.9  bits: 352.6 E(85289): 9.5e-97
Smith-Waterman score: 2241; 84.9% identity (84.9% similar) in 425 aa overlap (1-425:1-361)

               10        20        30        40        50        60
pF1KE3 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
       ::::::::::::::::::                                          
NP_001 GPTDVGKSTVCRLLLNYA------------------------------------------
              130                                                  

              190       200       210       220       230       240
pF1KE3 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
                             ::::::::::::::::::::::::::::::::::::::
NP_001 ----------------------ITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
                            140       150       160       170      

              250       260       270       280       290       300
pF1KE3 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
        180       190       200       210       220       230      

              310       320       330       340       350       360
pF1KE3 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
        240       250       260       270       280       290      

              370       380       390       400       410       420
pF1KE3 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
        300       310       320       330       340       350      

            
pF1KE3 FMDLK
       :::::
NP_001 FMDLK
        360 




425 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:38:57 2016 done: Sun Nov  6 01:38:58 2016
 Total Scan time:  8.660 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]