FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3172, 403 aa
  1>>>pF1KE3172 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2487+/-0.00102; mu= 12.9397+/- 0.062
 mean_var=91.8524+/-18.170, 0's: 0 Z-trim(105.5): 21  B-trim: 0 in 0/51
 Lambda= 0.133822
 statistics sampled from 8435 (8446) to 8435 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.259), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS43122.1 TRMT10C gene_id:54931|Hs108|chr3       ( 403) 2656 523.1 1.8e-148
CCDS43804.1 TRMT10B gene_id:158234|Hs108|chr9      ( 316)  324 72.8 4.9e-13
CCDS69601.1 TRMT10B gene_id:158234|Hs108|chr9      ( 221)  314 70.8 1.4e-12


>>CCDS43122.1 TRMT10C gene_id:54931|Hs108|chr3            (403 aa)
 initn: 2656 init1: 2656 opt: 2656  Z-score: 2779.2  bits: 523.1 E(32554): 1.8e-148
Smith-Waterman score: 2656; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE3 MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAAFLKMSVSVNFFRPFTRFLVPFTLHRKRNNLTILQRYMSSKIPAVTYPKNESTPPSEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LELDKWKTTMKSSVQEECVSTISSSKDEDPLAATREFIEMWRLLGREVPEHITEEELKTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MECVSNTAKKKYLKYLYTKEKVKKARQIKKEMKAAAREEAKNIKLLETTEEDKQKNFLFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 RLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQLLESEGWNRRNVDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 FHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDSIIYLTADSPNVMTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 FRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEIGNKNLTLDQMIRIL
              310       320       330       340       350       360

              370       380       390       400   
pF1KE3 LCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT
       :::::::::::::::::::::::::::::::::::::::::::
CCDS43 LCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKAKT
              370       380       390       400   

>>CCDS43804.1 TRMT10B gene_id:158234|Hs108|chr9           (316 aa)
 initn: 211 init1: 186 opt: 324  Z-score: 347.6  bits: 72.8 E(32554): 4.9e-13
Smith-Waterman score: 332; 28.7% identity (62.0% similar) in 258 aa overlap (123-374:61-300)

            100       110       120       130        140       150 
pF1KE3 ATREFIEMWRLLGREVPEHITEEELKTLMECVSNTAKK-KYLKYLYTKEKVKKARQIKKE
                                     : .:. .: .. . . . .: :  :. .::
CCDS43 GLPEGFQLLQIDAEGECQEGEILATGSTAWCSKNVQRKQRHWEKIVAAKKSK--RKQEKE
               40        50        60        70        80          

             160       170       180       190       200       210 
pF1KE3 MKAAAREEAKNIKLLETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQPLVFDMAY
        . : : :  .:      ...:.    :::   ..       :  .: . :  : .:...
CCDS43 RRKANRAENPGI----CPQHSKR----FLRALTKD-------KLLEAKHSGPRLCIDLSM
       90       100               110              120       130   

             220       230       240       250       260       270 
pF1KE3 ENYMKRKELQNTVSQLLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLL
        .::..:::.  ..:. .  : :..   :: : . ..  :. :..: : :... ... ::
CCDS43 THYMSKKELSRLAGQIRRLYGSNKKADRPFWICLTGFTTDSPLYEECV-RMNDGFSSYLL
           140       150       160       170       180        190  

             280       290       300       310       320       330 
pF1KE3 TSTEKSHVDLFPKDSIIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNL
         ::..  .::: ....::: :: ...     .:::..:..::.:.:  ... ::.. ..
CCDS43 DITEEDCFSLFPLETLVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTFQKAREYSV
            200       210       220       230       240       250  

             340       350            360       370       380      
pF1KE3 ATECLPLDKYLQWEIGNKN-----LTLDQMIRILLCLKNNGNWQEALQFVPKRKHTGFLE
        :  ::...:.  . ..::     :...:.. ::    .. :: :::.            
CCDS43 KTARLPIQEYMVRNQNGKNYHSEILAINQVFDILSTYLETHNWPEALKKGVSSGKGYILR
            260       270       280       290       300       310  

        390       400   
pF1KE3 ISQHSQEFINRLKKAKT
                        
CCDS43 NSVE             
                        

>>CCDS69601.1 TRMT10B gene_id:158234|Hs108|chr9           (221 aa)
 initn: 211 init1: 186 opt: 314  Z-score: 339.5  bits: 70.8 E(32554): 1.4e-12
Smith-Waterman score: 314; 31.1% identity (67.8% similar) in 183 aa overlap (197-374:24-205)

        170       180       190       200       210       220      
pF1KE3 ETTEEDKQKNFLFLRLWDRNMDIAMGWKGAQAMQFGQPLVFDMAYENYMKRKELQNTVSQ
                                     .: . :  : .:... .::..:::.  ..:
CCDS69        MVLGICPQHSKRFLRALTKDKLLEAKHSGPRLCIDLSMTHYMSKKELSRLAGQ
                      10        20        30        40        50   

        230       240       250       260       270       280      
pF1KE3 LLESEGWNRRNVDPFHIYFCNLKIDGALHRELVKRYQEKWDKLLLTSTEKSHVDLFPKDS
       . .  : :..   :: : . ..  :. :..: : :... ... ::  ::..  .::: ..
CCDS69 IRRLYGSNKKADRPFWICLTGFTTDSPLYEECV-RMNDGFSSYLLDITEEDCFSLFPLET
            60        70        80         90       100       110  

        290       300       310       320       330       340      
pF1KE3 IIYLTADSPNVMTTFRHDKVYVIGSFVDKSMQPGTSLAKAKRLNLATECLPLDKYLQWEI
       ..::: :: ...     .:::..:..::.:.:  ... ::.. .. :  ::...:.  . 
CCDS69 LVYLTPDSEHALEDVDLNKVYILGGLVDESIQKKVTFQKAREYSVKTARLPIQEYMVRNQ
            120       130       140       150       160       170  

        350            360       370       380       390       400 
pF1KE3 GNKN-----LTLDQMIRILLCLKNNGNWQEALQFVPKRKHTGFLEISQHSQEFINRLKKA
       ..::     :...:.. ::    .. :: :::.                           
CCDS69 NGKNYHSEILAINQVFDILSTYLETHNWPEALKKGVSSGKGYILRNSVE           
            180       190       200       210       220            

         
pF1KE3 KT




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:19:29 2016 done: Mon Nov  7 03:19:29 2016
 Total Scan time:  1.890 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]