Result of FASTA (omim) for
pFN21AE3171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3171, 403 aa
1>>>pF1KE3171 403 - 403 aa - 403 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8925+/-0.000403; mu= 18.8142+/- 0.025
mean_var=62.6478+/-12.623, 0's: 0 Z-trim(110.5): 25 B-trim: 0 in 0/54
Lambda= 0.162040
statistics sampled from 18863 (18880) to 18863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.221), width: 16
Scan time: 8.410
The best scores are: opt bits E(85289)
NP_671717 (OMIM: 609096) F-box only protein 22 iso ( 403) 2680 635.6 6.5e-182
XP_011519749 (OMIM: 609096) PREDICTED: F-box only ( 299) 1973 470.2 2.9e-132
NP_036302 (OMIM: 609096) F-box only protein 22 iso ( 276) 1759 420.2 3.2e-117
>>NP_671717 (OMIM: 609096) F-box only protein 22 isoform (403 aa)
initn: 2680 init1: 2680 opt: 2680 Z-score: 3386.9 bits: 635.6 E(85289): 6.5e-182
Smith-Waterman score: 2680; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)
10 20 30 40 50 60
pF1KE3 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 TAEAAMQRLKAANIPEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_671 TAEAAMQRLKAANIPEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGN
310 320 330 340 350 360
370 380 390 400
pF1KE3 GEIGCDRIVTGNFILRKCNEVKDDDLFHSYTTIMALIHLGSSK
:::::::::::::::::::::::::::::::::::::::::::
NP_671 GEIGCDRIVTGNFILRKCNEVKDDDLFHSYTTIMALIHLGSSK
370 380 390 400
>>XP_011519749 (OMIM: 609096) PREDICTED: F-box only prot (299 aa)
initn: 1973 init1: 1973 opt: 1973 Z-score: 2495.5 bits: 470.2 E(85289): 2.9e-132
Smith-Waterman score: 1973; 100.0% identity (100.0% similar) in 299 aa overlap (105-403:1-299)
80 90 100 110 120 130
pF1KE3 EAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGHKRARKRTSMETALA
::::::::::::::::::::::::::::::
XP_011 MADSETFISLEECRGHKRARKRTSMETALA
10 20 30
140 150 160 170 180 190
pF1KE3 LEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFPQIEGIKIQPFHFIK
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE3 DPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVVSTFSDMNIILAGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVVSTFSDMNIILAGGQ
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE3 VDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEKTAEAAMQRLKAANI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEKTAEAAMQRLKAANI
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE3 PEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRIVTGNFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGNGEIGCDRIVTGNFI
220 230 240 250 260 270
380 390 400
pF1KE3 LRKCNEVKDDDLFHSYTTIMALIHLGSSK
:::::::::::::::::::::::::::::
XP_011 LRKCNEVKDDDLFHSYTTIMALIHLGSSK
280 290
>>NP_036302 (OMIM: 609096) F-box only protein 22 isoform (276 aa)
initn: 1759 init1: 1759 opt: 1759 Z-score: 2225.6 bits: 420.2 E(85289): 3.2e-117
Smith-Waterman score: 1759; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)
10 20 30 40 50 60
pF1KE3 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK
:::::::::::::::::::::::::
NP_036 STFSDMNIILAGGQVDNLSSLTSEKYVLCASDFVCE
250 260 270
403 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:10:37 2016 done: Sun Nov 6 14:10:38 2016
Total Scan time: 8.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]