FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3171, 403 aa
  1>>>pF1KE3171 403 - 403 aa - 403 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1299+/-0.000869; mu= 17.3698+/- 0.052
 mean_var=59.4759+/-12.075, 0's: 0 Z-trim(104.4): 19  B-trim: 8 in 1/50
 Lambda= 0.166304
 statistics sampled from 7866 (7873) to 7866 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.242), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS10287.1 FBXO22 gene_id:26263|Hs108|chr15       ( 403) 2680 651.6 3.6e-187
CCDS45310.1 FBXO22 gene_id:26263|Hs108|chr15       ( 276) 1759 430.6 8.7e-121


>>CCDS10287.1 FBXO22 gene_id:26263|Hs108|chr15            (403 aa)
 initn: 2680 init1: 2680 opt: 2680  Z-score: 3473.7  bits: 651.6 E(32554): 3.6e-187
Smith-Waterman score: 2680; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403)

               10        20        30        40        50        60
pF1KE3 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 TAEAAMQRLKAANIPEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TAEAAMQRLKAANIPEHNTIGFMFACVGRGFQYYRAKGNVEADAFRKFFPSVPLFGFFGN
              310       320       330       340       350       360

              370       380       390       400   
pF1KE3 GEIGCDRIVTGNFILRKCNEVKDDDLFHSYTTIMALIHLGSSK
       :::::::::::::::::::::::::::::::::::::::::::
CCDS10 GEIGCDRIVTGNFILRKCNEVKDDDLFHSYTTIMALIHLGSSK
              370       380       390       400   

>>CCDS45310.1 FBXO22 gene_id:26263|Hs108|chr15            (276 aa)
 initn: 1759 init1: 1759 opt: 1759  Z-score: 2282.0  bits: 430.6 E(32554): 8.7e-121
Smith-Waterman score: 1759; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KE3 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEPVGCCGECRGSSVDPRSTFVLSNLAEVVERVLTFLPAKALLRVACVCRLWRECVRRVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RTHRSVTWISAGLAEAGHLEGHCLVRVVAEELENVRILPHTVLYMADSETFISLEECRGH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KRARKRTSMETALALEKLFPKQCQVLGIVTPGIVVTPMGSGSNRPQEIEIGESGFALLFP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QIEGIKIQPFHFIKDPKNLTLERHQLTEVGLLDNPELRVVLVFGYNCCKVGASNYLQQVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 STFSDMNIILAGGQVDNLSSLTSEKNPLDIDASGVVGLSFSGHRIQSATVLLNEDVSDEK
       :::::::::::::::::::::::::                                   
CCDS45 STFSDMNIILAGGQVDNLSSLTSEKYVLCASDFVCE                        
              250       260       270                              




403 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:10:36 2016 done: Sun Nov  6 14:10:36 2016
 Total Scan time:  2.830 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]