FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3169, 399 aa
  1>>>pF1KE3169 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.2777+/-0.00109; mu= -20.3153+/- 0.066
 mean_var=661.5009+/-134.230, 0's: 0 Z-trim(118.5): 46  B-trim: 61 in 1/54
 Lambda= 0.049867
 statistics sampled from 19467 (19511) to 19467 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.599), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS33055.1 MYPOP gene_id:339344|Hs108|chr19       ( 399) 2800 215.6 6.5e-56


>>CCDS33055.1 MYPOP gene_id:339344|Hs108|chr19            (399 aa)
 initn: 2800 init1: 2800 opt: 2800  Z-score: 1117.3  bits: 215.6 E(32554): 6.5e-56
Smith-Waterman score: 2800; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KE3 MASAAAGEAEETTRLRKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDGIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MASAAAGEAEETTRLRKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDGIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AKINGITSWKRTGQEVQKRWNDFKRRTKEKLARVPHSTQGAGPAAEDAFSAEEETIFAIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AKINGITSWKRTGQEVQKRWNDFKRRTKEKLARVPHSTQGAGPAAEDAFSAEEETIFAIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GPGVAAPGAGAGAEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GPGVAAPGAGAGAEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 PSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALSALLPLLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALSALLPLLPG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 TPVDSLPPPLPPPPPPPPPPRPVLPPPAPKVEITPEPVSVVAAVVDGAVVAARGVIIAPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TPVDSLPPPLPPPPPPPPPPRPVLPPPAPKVEITPEPVSVVAAVVDGAVVAARGVIIAPR
              310       320       330       340       350       360

              370       380       390         
pF1KE3 SEEGAPRPPPAPLPPHDSPPHKRRKGFPTRKRRGRWKSP
       :::::::::::::::::::::::::::::::::::::::
CCDS33 SEEGAPRPPPAPLPPHDSPPHKRRKGFPTRKRRGRWKSP
              370       380       390         




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:30:12 2016 done: Mon Nov  7 17:30:13 2016
 Total Scan time:  3.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]