FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3162, 380 aa
  1>>>pF1KE3162 380 - 380 aa - 380 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8205+/-0.000719; mu= 12.2923+/- 0.044
 mean_var=145.3417+/-28.571, 0's: 0 Z-trim(115.4): 16  B-trim: 49 in 1/51
 Lambda= 0.106385
 statistics sampled from 15984 (15993) to 15984 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.491), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS47694.1 TMEM229A gene_id:730130|Hs108|chr7     ( 380) 2664 419.8  2e-117


>>CCDS47694.1 TMEM229A gene_id:730130|Hs108|chr7          (380 aa)
 initn: 2664 init1: 2664 opt: 2664  Z-score: 2221.5  bits: 419.8 E(32554): 2e-117
Smith-Waterman score: 2664; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)

               10        20        30        40        50        60
pF1KE3 MAGSDVDSEGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMRLYFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAGSDVDSEGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMRLYFY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALEKVYLQQRRCPNAFVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALEKVYLQQRRCPNAFVF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NFLLYPSAHVGLQTLAGQALLLSLGGGAGVAVAPGALDLALQYVLALYHCQVFLKRFLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NFLLYPSAHVGLQTLAGQALLLSLGGGAGVAVAPGALDLALQYVLALYHCQVFLKRFLRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVEKLYFHLHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVEKLYFHLHY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SRGWGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITLMYLPGWIFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SRGWGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITLMYLPGWIFL
              310       320       330       340       350       360

              370       380
pF1KE3 SVYQDLISNVLWRVQYVPAN
       ::::::::::::::::::::
CCDS47 SVYQDLISNVLWRVQYVPAN
              370       380




380 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 02:06:15 2016 done: Tue Nov  8 02:06:16 2016
 Total Scan time:  3.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]