Result of FASTA (omim) for
pFN21AE3161
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3161, 375 aa
1>>>pF1KE3161 375 - 375 aa - 375 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9076+/-0.00032; mu= 19.2463+/- 0.020
mean_var=71.5913+/-14.614, 0's: 0 Z-trim(117.1): 41 B-trim: 52 in 1/49
Lambda= 0.151581
statistics sampled from 28790 (28831) to 28790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.338), width: 16
Scan time: 8.290
The best scores are: opt bits E(85289)
NP_060532 (OMIM: 189960,608111,614083) E3 ubiquiti ( 375) 2572 571.4 1.2e-162
NP_001108108 (OMIM: 189960,608111,614083) E3 ubiqu ( 380) 2552 567.0 2.5e-161
XP_005264452 (OMIM: 189960,608111,614083) PREDICTE ( 383) 2503 556.3 4.2e-158
XP_011531244 (OMIM: 189960,608111,614083) PREDICTE ( 388) 2483 551.9 8.8e-157
XP_005264454 (OMIM: 189960,608111,614083) PREDICTE ( 258) 1739 389.1 6.2e-108
XP_016859905 (OMIM: 189960,608111,614083) PREDICTE ( 266) 1670 374.0 2.2e-103
XP_011531247 (OMIM: 189960,608111,614083) PREDICTE ( 271) 1650 369.6 4.6e-102
XP_016859903 (OMIM: 189960,608111,614083) PREDICTE ( 390) 1357 305.7 1.2e-82
XP_011531243 (OMIM: 189960,608111,614083) PREDICTE ( 395) 1357 305.7 1.2e-82
XP_011531246 (OMIM: 189960,608111,614083) PREDICTE ( 286) 1288 290.5 3.3e-78
XP_011531242 (OMIM: 189960,608111,614083) PREDICTE ( 398) 1288 290.6 4.2e-78
XP_011531241 (OMIM: 189960,608111,614083) PREDICTE ( 403) 1288 290.6 4.2e-78
XP_016859904 (OMIM: 189960,608111,614083) PREDICTE ( 212) 1215 274.4 1.7e-73
>>NP_060532 (OMIM: 189960,608111,614083) E3 ubiquitin-pr (375 aa)
initn: 2572 init1: 2572 opt: 2572 Z-score: 3041.1 bits: 571.4 E(85289): 1.2e-162
Smith-Waterman score: 2572; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP
310 320 330 340 350 360
370
pF1KE3 YCSKPITLKMSGRKH
:::::::::::::::
NP_060 YCSKPITLKMSGRKH
370
>>NP_001108108 (OMIM: 189960,608111,614083) E3 ubiquitin (380 aa)
initn: 1376 init1: 1376 opt: 2552 Z-score: 3017.4 bits: 567.0 E(85289): 2.5e-161
Smith-Waterman score: 2552; 98.7% identity (98.7% similar) in 380 aa overlap (1-375:1-380)
10 20 30 40 50 60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 -----SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNSPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII
310 320 330 340 350 360
360 370
pF1KE3 FGECPYCSKPITLKMSGRKH
::::::::::::::::::::
NP_001 FGECPYCSKPITLKMSGRKH
370 380
>>XP_005264452 (OMIM: 189960,608111,614083) PREDICTED: E (383 aa)
initn: 2498 init1: 2498 opt: 2503 Z-score: 2959.4 bits: 556.3 E(85289): 4.2e-158
Smith-Waterman score: 2503; 97.9% identity (98.9% similar) in 374 aa overlap (1-374:1-374)
10 20 30 40 50 60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP
310 320 330 340 350 360
370
pF1KE3 YCSKPITLKMSGRKH
:::: : ....:
XP_005 YCSKVSKLLITSHKMCLAFSNMF
370 380
>>XP_011531244 (OMIM: 189960,608111,614083) PREDICTED: E (388 aa)
initn: 1302 init1: 1302 opt: 2483 Z-score: 2935.7 bits: 551.9 E(85289): 8.8e-157
Smith-Waterman score: 2483; 96.6% identity (97.6% similar) in 379 aa overlap (1-374:1-379)
10 20 30 40 50 60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 -----SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VNSPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE3 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE3 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII
310 320 330 340 350 360
360 370
pF1KE3 FGECPYCSKPITLKMSGRKH
::::::::: : ....:
XP_011 FGECPYCSKVSKLLITSHKMCLAFSNMF
370 380
>>XP_005264454 (OMIM: 189960,608111,614083) PREDICTED: E (258 aa)
initn: 1739 init1: 1739 opt: 1739 Z-score: 2058.8 bits: 389.1 E(85289): 6.2e-108
Smith-Waterman score: 1739; 99.6% identity (100.0% similar) in 251 aa overlap (125-375:8-258)
100 110 120 130 140 150
pF1KE3 LKNRQELYALPPPPQFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKL
.:::::::::::::::::::::::::::::
XP_005 MRDSSRLRLVYADTCFSTIKLKAEDASGREHLITLKL
10 20 30
160 170 180 190 200 210
pF1KE3 KAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVL
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE3 EPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLW
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE3 DPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFH
160 170 180 190 200 210
340 350 360 370
pF1KE3 QICLYEWLRGLLTSRQSFNIIFGECPYCSKPITLKMSGRKH
:::::::::::::::::::::::::::::::::::::::::
XP_005 QICLYEWLRGLLTSRQSFNIIFGECPYCSKPITLKMSGRKH
220 230 240 250
>>XP_016859905 (OMIM: 189960,608111,614083) PREDICTED: E (266 aa)
initn: 1665 init1: 1665 opt: 1670 Z-score: 1977.0 bits: 374.0 E(85289): 2.2e-103
Smith-Waterman score: 1670; 96.4% identity (98.4% similar) in 250 aa overlap (125-374:8-257)
100 110 120 130 140 150
pF1KE3 LKNRQELYALPPPPQFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKL
.:::::::::::::::::::::::::::::
XP_016 MRDSSRLRLVYADTCFSTIKLKAEDASGREHLITLKL
10 20 30
160 170 180 190 200 210
pF1KE3 KAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAKYPAESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVL
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE3 EPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLW
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE3 DPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFH
160 170 180 190 200 210
340 350 360 370
pF1KE3 QICLYEWLRGLLTSRQSFNIIFGECPYCSKPITLKMSGRKH
:::::::::::::::::::::::::::::: : ....:
XP_016 QICLYEWLRGLLTSRQSFNIIFGECPYCSKVSKLLITSHKMCLAFSNMF
220 230 240 250 260
>>XP_011531247 (OMIM: 189960,608111,614083) PREDICTED: E (271 aa)
initn: 1302 init1: 1302 opt: 1650 Z-score: 1953.3 bits: 369.6 E(85289): 4.6e-102
Smith-Waterman score: 1650; 94.5% identity (96.5% similar) in 255 aa overlap (125-374:8-262)
100 110 120 130 140 150
pF1KE3 LKNRQELYALPPPPQFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKL
.:::::::::::::::::::::::::::::
XP_011 MRDSSRLRLVYADTCFSTIKLKAEDASGREHLITLKL
10 20 30
160 170 180 190 200
pF1KE3 KAKYPAESPDYFVDFPVPFCASWTPQ-----SSLISIYSQFLAAIESLKAFWDVMDEIDE
:::::::::::::::::::::::::: :::::::::::::::::::::::::::::
XP_011 KAKYPAESPDYFVDFPVPFCASWTPQVNSPQSSLISIYSQFLAAIESLKAFWDVMDEIDE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE3 KTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSR
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE3 NIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQC
160 170 180 190 200 210
330 340 350 360 370
pF1KE3 GQPFHQICLYEWLRGLLTSRQSFNIIFGECPYCSKPITLKMSGRKH
::::::::::::::::::::::::::::::::::: : ....:
XP_011 GQPFHQICLYEWLRGLLTSRQSFNIIFGECPYCSKVSKLLITSHKMCLAFSNMF
220 230 240 250 260 270
>>XP_016859903 (OMIM: 189960,608111,614083) PREDICTED: E (390 aa)
initn: 2558 init1: 1357 opt: 1357 Z-score: 1604.9 bits: 305.7 E(85289): 1.2e-82
Smith-Waterman score: 2532; 96.2% identity (96.2% similar) in 390 aa overlap (1-375:1-390)
10 20 30 40 50 60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
130 140 150 160 170 180
190 200 210 220
pF1KE3 ---------------SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATA
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 VTDQAKMDVKIAVLPSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 RRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLK
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE3 DVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGL
310 320 330 340 350 360
350 360 370
pF1KE3 LTSRQSFNIIFGECPYCSKPITLKMSGRKH
::::::::::::::::::::::::::::::
XP_016 LTSRQSFNIIFGECPYCSKPITLKMSGRKH
370 380 390
>>XP_011531243 (OMIM: 189960,608111,614083) PREDICTED: E (395 aa)
initn: 2558 init1: 1357 opt: 1357 Z-score: 1604.8 bits: 305.7 E(85289): 1.2e-82
Smith-Waterman score: 2522; 94.9% identity (94.9% similar) in 395 aa overlap (1-375:1-395)
10 20 30 40 50 60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
130 140 150 160 170 180
190 200 210 220
pF1KE3 --------------------SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPP
::::::::::::::::::::::::::::::::::::::::
XP_011 VNSPQVTDQAKMDVKIAVLPSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPP
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 RSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSATARRIALGNNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSV
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE3 LQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYE
310 320 330 340 350 360
350 360 370
pF1KE3 WLRGLLTSRQSFNIIFGECPYCSKPITLKMSGRKH
:::::::::::::::::::::::::::::::::::
XP_011 WLRGLLTSRQSFNIIFGECPYCSKPITLKMSGRKH
370 380 390
>>XP_011531246 (OMIM: 189960,608111,614083) PREDICTED: E (286 aa)
initn: 1651 init1: 1283 opt: 1288 Z-score: 1525.2 bits: 290.5 E(85289): 3.3e-78
Smith-Waterman score: 1620; 89.3% identity (91.1% similar) in 270 aa overlap (125-374:8-277)
100 110 120 130 140 150
pF1KE3 LKNRQELYALPPPPQFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKL
.:::::::::::::::::::::::::::::
XP_011 MRDSSRLRLVYADTCFSTIKLKAEDASGREHLITLKL
10 20 30
160 170 180 190
pF1KE3 KAKYPAESPDYFVDFPVPFCASWTPQ--------------------SSLISIYSQFLAAI
:::::::::::::::::::::::::: ::::::::::::::
XP_011 KAKYPAESPDYFVDFPVPFCASWTPQVNSPQVTDQAKMDVKIAVLPSSLISIYSQFLAAI
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE3 ESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEVDPRHPTMLPECFFL
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE3 GADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQ
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE3 LDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYCSKPITLKMSGRK
:::::::::::::::::::::::::::::::::::::::::::::::::: : ....:
XP_011 LDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYCSKVSKLLITSHK
220 230 240 250 260 270
pF1KE3 H
XP_011 MCLAFSNMF
280
375 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:28:14 2016 done: Sun Nov 6 18:28:15 2016
Total Scan time: 8.290 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]