FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3161, 375 aa
  1>>>pF1KE3161 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1471+/-0.000722; mu= 18.0310+/- 0.044
 mean_var=72.6090+/-14.602, 0's: 0 Z-trim(110.1): 17  B-trim: 0 in 0/49
 Lambda= 0.150515
 statistics sampled from 11368 (11379) to 11368 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.35), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS1860.1 FANCL gene_id:55120|Hs108|chr2          ( 375) 2572 567.4 7.1e-162
CCDS46294.1 FANCL gene_id:55120|Hs108|chr2         ( 380) 2552 563.1 1.5e-160


>>CCDS1860.1 FANCL gene_id:55120|Hs108|chr2               (375 aa)
 initn: 2572 init1: 2572 opt: 2572  Z-score: 3019.6  bits: 567.4 E(32554): 7.1e-162
Smith-Waterman score: 2572; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECP
              310       320       330       340       350       360

              370     
pF1KE3 YCSKPITLKMSGRKH
       :::::::::::::::
CCDS18 YCSKPITLKMSGRKH
              370     

>>CCDS46294.1 FANCL gene_id:55120|Hs108|chr2              (380 aa)
 initn: 1376 init1: 1376 opt: 2552  Z-score: 2996.1  bits: 563.1 E(32554): 1.5e-160
Smith-Waterman score: 2552; 98.7% identity (98.7% similar) in 380 aa overlap (1-375:1-380)

               10        20        30        40        50        60
pF1KE3 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TILSGYHRIVQQRMQHSPDLMSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPVPFCASWTPQ
              130       140       150       160       170       180

                   190       200       210       220       230     
pF1KE3 -----SSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VNSPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVS
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KE3 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 INIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPAR
              250       260       270       280       290       300

         300       310       320       330       340       350     
pF1KE3 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AILEKSDFTMDCGICYAYQLDGTIPDQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNII
              310       320       330       340       350       360

         360       370     
pF1KE3 FGECPYCSKPITLKMSGRKH
       ::::::::::::::::::::
CCDS46 FGECPYCSKPITLKMSGRKH
              370       380




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:28:13 2016 done: Sun Nov  6 18:28:14 2016
 Total Scan time:  2.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]