Result of FASTA (omim) for
pFN21AE3160
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3160, 380 aa
1>>>pF1KE3160 380 - 380 aa - 380 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9207+/-0.000383; mu= 19.1729+/- 0.024
mean_var=73.3475+/-14.798, 0's: 0 Z-trim(112.7): 15 B-trim: 29 in 1/48
Lambda= 0.149755
statistics sampled from 21671 (21678) to 21671 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.254), width: 16
Scan time: 8.060
The best scores are: opt bits E(85289)
NP_006536 (OMIM: 607072,617116) nitrogen permease ( 380) 2548 560.0 3.3e-159
XP_011531590 (OMIM: 607072,617116) PREDICTED: nitr ( 377) 2161 476.4 4.8e-134
XP_016861044 (OMIM: 607072,617116) PREDICTED: nitr ( 260) 1753 388.1 1.3e-107
XP_005264865 (OMIM: 607072,617116) PREDICTED: nitr ( 260) 1753 388.1 1.3e-107
XP_016861045 (OMIM: 607072,617116) PREDICTED: nitr ( 260) 1753 388.1 1.3e-107
>>NP_006536 (OMIM: 607072,617116) nitrogen permease regu (380 aa)
initn: 2548 init1: 2548 opt: 2548 Z-score: 2979.3 bits: 560.0 E(85289): 3.3e-159
Smith-Waterman score: 2548; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380)
10 20 30 40 50 60
pF1KE3 MGSGCRIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGSGCRIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 YSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 HPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEICCKTGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEICCKTGM
310 320 330 340 350 360
370 380
pF1KE3 SYHELDERLENDPNIIICWK
::::::::::::::::::::
NP_006 SYHELDERLENDPNIIICWK
370 380
>>XP_011531590 (OMIM: 607072,617116) PREDICTED: nitrogen (377 aa)
initn: 2155 init1: 2155 opt: 2161 Z-score: 2527.5 bits: 476.4 E(85289): 4.8e-134
Smith-Waterman score: 2161; 89.2% identity (92.5% similar) in 371 aa overlap (15-380:8-377)
10 20 30 40 50
pF1KE3 MGSGCRIECIFFSEFHP----TLGPKITYQVPEDF-ISRELFDTVQVYIITKPELQNKLI
.:: : :: :. .:... : .: ..: . .
XP_011 MRRSPFVLHPVQMSTEGP-IATPLPRSLKTSSPESCLTQSKCTSSPSQSCRTS
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 TVTAMEKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELE
.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSLSMEKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 SSFVSMEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSFVSMEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVP
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 VFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 VSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVR
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 DLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEIC
300 310 320 330 340 350
360 370 380
pF1KE3 CKTGMSYHELDERLENDPNIIICWK
:::::::::::::::::::::::::
XP_011 CKTGMSYHELDERLENDPNIIICWK
360 370
>>XP_016861044 (OMIM: 607072,617116) PREDICTED: nitrogen (260 aa)
initn: 1753 init1: 1753 opt: 1753 Z-score: 2053.2 bits: 388.1 E(85289): 1.3e-107
Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 260 aa overlap (121-380:1-260)
100 110 120 130 140 150
pF1KE3 AQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELNASGRCTLPID
::::::::::::::::::::::::::::::
XP_016 MEESKQKLVPIMTILLEELNASGRCTLPID
10 20 30
160 170 180 190 200 210
pF1KE3 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE3 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE3 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP
160 170 180 190 200 210
340 350 360 370 380
pF1KE3 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK
220 230 240 250 260
>>XP_005264865 (OMIM: 607072,617116) PREDICTED: nitrogen (260 aa)
initn: 1753 init1: 1753 opt: 1753 Z-score: 2053.2 bits: 388.1 E(85289): 1.3e-107
Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 260 aa overlap (121-380:1-260)
100 110 120 130 140 150
pF1KE3 AQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELNASGRCTLPID
::::::::::::::::::::::::::::::
XP_005 MEESKQKLVPIMTILLEELNASGRCTLPID
10 20 30
160 170 180 190 200 210
pF1KE3 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE3 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE3 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP
160 170 180 190 200 210
340 350 360 370 380
pF1KE3 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK
220 230 240 250 260
>>XP_016861045 (OMIM: 607072,617116) PREDICTED: nitrogen (260 aa)
initn: 1753 init1: 1753 opt: 1753 Z-score: 2053.2 bits: 388.1 E(85289): 1.3e-107
Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 260 aa overlap (121-380:1-260)
100 110 120 130 140 150
pF1KE3 AQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELNASGRCTLPID
::::::::::::::::::::::::::::::
XP_016 MEESKQKLVPIMTILLEELNASGRCTLPID
10 20 30
160 170 180 190 200 210
pF1KE3 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS
40 50 60 70 80 90
220 230 240 250 260 270
pF1KE3 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK
100 110 120 130 140 150
280 290 300 310 320 330
pF1KE3 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP
160 170 180 190 200 210
340 350 360 370 380
pF1KE3 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK
220 230 240 250 260
380 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 17:47:02 2016 done: Sun Nov 6 17:47:03 2016
Total Scan time: 8.060 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]